| Family ID | 20923 |
| Family name | Pollen Allergen/Expansin Superfamily |
| Synonym(s) | |
| Cross-reference(s) |
|
Curation status  |
|
| Phylogenetic analyzes | Not available |
Link to GreenPhyl V1.0 : 20923
Family structure
| Clustering level | Family id (number of sequences) |
|---|---|
| 1 | 20923 (812) |
| 2 | 24999 (689) 25670 (26) 26339 (66) |
| 3 | 30583 (515) 31138 (117) 31147 (26) 31717 (57) 31804 (66) |
| 4 | 36255 (410) 36521 (194) 36760 (26) 37177 (85) 37759 (61) |
Info:
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Annotated gene families at the different levels are underlined. Gene family name pops up when you mouse over.
- Gene families are coloured in blue when the phylogenetic analyses are available.
Family composition
Total : 812
"
| Species | Number |
| Chlamydomonas reinhardtii | 5 |
| Ostreococcus tauri | 1 |
| Physcomitrella patens | 38 |
| Selaginella moellendorffii | 53 |
| Oryza sativa | 86 |
| Brachypodium distachyon | 60 |
| Zea mays | 138 |
| Sorghum bicolor | 100 |
| Vitis vinifera | 40 |
| Arabidopsis thaliana | 43 |
| Carica papaya | 30 |
| Populus trichocarpa | 56 |
| Ricinus communis | 30 |
| Glycine max | 111 |
| Medicago truncatula | 21 |
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"
| Species | Number |
| Chlamydomonas reinhardtii | 0.2993 |
| Ostreococcus tauri | 0.1294 |
| Physcomitrella patens | 1.0574 |
| Selaginella moellendorffii | 1.5275 |
| Oryza sativa | 1.2761 |
| Brachypodium distachyon | 1.3510 |
| Zea mays | 2.5668 |
| Sorghum bicolor | 2.7519 |
| Vitis vinifera | 1.3143 |
| Arabidopsis thaliana | 1.2952 |
| Carica papaya | 1.2106 |
| Populus trichocarpa | 1.2293 |
| Ricinus communis | 0.9609 |
| Glycine max | 1.4648 |
| Medicago truncatula | 0.5419 |
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Information to display :
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Protein domains
InterPro family
InterPro family
| IPR | Annotation | Type | % | Occurence | Specificity |
|---|---|---|---|---|---|
| IPR007118 | Expansin/Lol pI | Family | 80 | (653) | Y |
Other InterPro signatures
Other InterPro signatures
| IPR | Annotation | Type | % | Occurence | Specificity |
| IPR014734 | Pollen allergen, N-terminal | Domain | 57 | (466) | N |
| IPR009009 | Barwin-related endoglucanase | Domain | 58 | (472) | N |
| IPR005132 | Rare lipoprotein A | Domain | 89 | (722) | N |
| IPR007117 | Pollen allergen/expansin, C-terminal | Domain | 82 | (667) | N |
| IPR007112 | Expansin 45, endoglucanase-like | Domain | 88 | (714) | N |
Domain architecture
Domain architecture
Representative InterPro domains - Consensus schema (alpha version)
Representative InterPro domains - Consensus schema (alpha version)
Protein list
Build your own display:
Phylogenomic analysis
Warning: Please note that the gene tree was reconstructed using PhyML with no optimization (bioNJ). Gene tree with more robust parameters is being processed and will be updated very soon
