| Family ID | 21118 |
| Family name | ATPase, F1/V1/A1 Complex Superfamily |
| Synonym(s) | |
| Cross-reference(s) |
|
Curation status  |
|
| Phylogenetic analyzes | Performed |
Link to GreenPhyl V1.0 : 21118
Family structure
| Clustering level | Family id (number of sequences) |
|---|---|
| 1 | 21118 (270) |
| 2 | 25894 (98) 26257 (51) 26420 (82) 27286 (20) 29503 (16) |
| 3 | 31365 (98) 31734 (51) 31887 (82) 33397 (20) |
| 4 | 36974 (98) 37342 (51) 37491 (82) 38998 (20) |
Info:
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Annotated gene families at the different levels are underlined. Gene family name pops up when you mouse over.
- Gene families are coloured in blue when the phylogenetic analyses are available.
Family composition
Total : 270
"
| Species | Number |
| Cyanidioschyzon merolae | 7 |
| Chlamydomonas reinhardtii | 5 |
| Ostreococcus tauri | 6 |
| Physcomitrella patens | 10 |
| Selaginella moellendorffii | 10 |
| Oryza sativa | 34 |
| Brachypodium distachyon | 15 |
| Zea mays | 15 |
| Sorghum bicolor | 18 |
| Vitis vinifera | 22 |
| Arabidopsis thaliana | 13 |
| Carica papaya | 5 |
| Populus trichocarpa | 33 |
| Ricinus communis | 25 |
| Glycine max | 30 |
| Medicago truncatula | 22 |
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| Species | Number |
| Cyanidioschyzon merolae | 1.3961 |
| Chlamydomonas reinhardtii | 0.2993 |
| Ostreococcus tauri | 0.7767 |
| Physcomitrella patens | 0.2783 |
| Selaginella moellendorffii | 0.2882 |
| Oryza sativa | 0.5045 |
| Brachypodium distachyon | 0.3378 |
| Zea mays | 0.2790 |
| Sorghum bicolor | 0.4953 |
| Vitis vinifera | 0.7229 |
| Arabidopsis thaliana | 0.3916 |
| Carica papaya | 0.2018 |
| Populus trichocarpa | 0.7244 |
| Ricinus communis | 0.8007 |
| Glycine max | 0.3959 |
| Medicago truncatula | 0.5678 |
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Information to display :
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Protein domains
InterPro family
InterPro family
| IPR | Annotation | Type | % | Occurence | Specificity |
|---|---|---|---|---|---|
| IPR005294 | ATPase, F1 complex, alpha subunit | Family | 9 | (24) | Y |
| IPR005714 | ATPase, type III secretion system, FliI/YscN | Family | <1 | (1) | Y |
| IPR005723 | ATPase, V1 complex, subunit B | Family | 16 | (42) | Y |
| IPR006839 | Uncharacterised protein family UPF0307 | Family | 2 | (6) | Y |
Other InterPro signatures
Other InterPro signatures
| IPR | Annotation | Type | % | Occurence | Specificity |
| IPR000793 | ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal | Domain | 56 | (150) | N |
| IPR004100 | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal | Domain | 54 | (146) | N |
| IPR000194 | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain | Domain | 62 | (167) | N |
Domain architecture
Domain architecture
Representative InterPro domains - Consensus schema (alpha version)
Representative InterPro domains - Consensus schema (alpha version)
Protein list
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Phylogenomic analysis
Warning: Please note that the gene tree was reconstructed using PhyML with no optimization (bioNJ). Gene tree with more robust parameters is being processed and will be updated very soon
