| Family ID | 21796 |
| Family name | S-Adenosylmethionine Decarboxylase Family |
| Synonym(s) | |
| Cross-reference(s) |
PMID: 11139406
|
Curation status  |
|
| Phylogenetic analyzes | Performed |
Link to GreenPhyl V1.0 : 21796
Family structure
| Clustering level | Family id (number of sequences) |
|---|---|
| 1 | 21796 (86) |
| 2 | 25910 (83) |
| 3 | 31486 (82) |
| 4 | 37094 (82) |
Info:
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Annotated gene families at the different levels are underlined. Gene family name pops up when you mouse over.
- Gene families are coloured in blue when the phylogenetic analyses are available.
Family composition
Total : 86
"
| Species | Number |
| Cyanidioschyzon merolae | 1 |
| Chlamydomonas reinhardtii | 1 |
| Ostreococcus tauri | 1 |
| Physcomitrella patens | 6 |
| Selaginella moellendorffii | 6 |
| Oryza sativa | 17 |
| Brachypodium distachyon | 3 |
| Zea mays | 10 |
| Sorghum bicolor | 3 |
| Vitis vinifera | 4 |
| Arabidopsis thaliana | 7 |
| Carica papaya | 4 |
| Populus trichocarpa | 7 |
| Ricinus communis | 4 |
| Glycine max | 11 |
| Medicago truncatula | 1 |
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"
| Species | Number |
| Cyanidioschyzon merolae | 0.1994 |
| Chlamydomonas reinhardtii | 0.0599 |
| Ostreococcus tauri | 0.1294 |
| Physcomitrella patens | 0.1670 |
| Selaginella moellendorffii | 0.1729 |
| Oryza sativa | 0.2523 |
| Brachypodium distachyon | 0.0676 |
| Zea mays | 0.1860 |
| Sorghum bicolor | 0.0826 |
| Vitis vinifera | 0.1314 |
| Arabidopsis thaliana | 0.2108 |
| Carica papaya | 0.1614 |
| Populus trichocarpa | 0.1537 |
| Ricinus communis | 0.1281 |
| Glycine max | 0.1452 |
| Medicago truncatula | 0.0258 |
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Information to display :
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Protein domains
InterPro family
InterPro family
| IPR | Annotation | Type | % | Occurence | Specificity |
|---|---|---|---|---|---|
| IPR001985 | S-adenosylmethionine decarboxylase | Family | 91 | (78) | N |
| IPR018167 | S-adenosylmethionine decarboxylase subgroup | Family | 44 | (38) | Y |
Other InterPro signatures
Other InterPro signatures
| IPR | Annotation | Type | % | Occurence | Specificity |
| IPR016067 | S-adenosylmethionine decarboxylase, core | Domain | 73 | (63) | Y |
| IPR018166 | S-adenosylmethionine decarboxylase, conserved site | Conserved_site | 44 | (38) | Y |
Domain architecture
Domain architecture
Representative InterPro domains - Consensus schema (alpha version)
Representative InterPro domains - Consensus schema (alpha version)
Protein list
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Phylogenomic analysis
Warning: Please note that the gene tree was reconstructed using PhyML with no optimization (bioNJ). Gene tree with more robust parameters is being processed and will be updated very soon
