| Family ID | 25047 |
| Family name | N/A |
| Synonym(s) | |
| Cross-reference(s) |
|
Curation status  |
|
| Phylogenetic analyzes | Not available |
Link to GreenPhyl V1.0 : 25047
Family structure
| Clustering level | Family id (number of sequences) |
|---|---|
| 1 | 20982 (457) |
| 2 | 25047 (433) |
| 3 | 30593 (433) |
| 4 | 36250 (432) |
Info:
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Annotated gene families at the different levels are underlined. Gene family name pops up when you mouse over.
- Gene families are coloured in blue when the phylogenetic analyses are available.
Family composition
Total : 433
"
| Species | Number |
| Chlamydomonas reinhardtii | 1 |
| Physcomitrella patens | 5 |
| Selaginella moellendorffii | 28 |
| Oryza sativa | 38 |
| Brachypodium distachyon | 28 |
| Zea mays | 38 |
| Sorghum bicolor | 46 |
| Vitis vinifera | 29 |
| Arabidopsis thaliana | 28 |
| Carica papaya | 18 |
| Populus trichocarpa | 59 |
| Ricinus communis | 24 |
| Glycine max | 75 |
| Medicago truncatula | 16 |
Plugin Missing
With Adobe Flash enabled you will have access to enhanced charts of this data. You can download Flash for your platform by clicking on the button to the right.
"
| Species | Number |
| Chlamydomonas reinhardtii | 0.0599 |
| Physcomitrella patens | 0.1391 |
| Selaginella moellendorffii | 0.8070 |
| Oryza sativa | 0.5639 |
| Brachypodium distachyon | 0.6305 |
| Zea mays | 0.7068 |
| Sorghum bicolor | 1.2659 |
| Vitis vinifera | 0.9529 |
| Arabidopsis thaliana | 0.8434 |
| Carica papaya | 0.7263 |
| Populus trichocarpa | 1.2951 |
| Ricinus communis | 0.7687 |
| Glycine max | 0.9897 |
| Medicago truncatula | 0.4129 |
Plugin Missing
With Adobe Flash enabled you will have access to enhanced charts of this data. You can download Flash for your platform by clicking on the button to the right.
Information to display :
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Protein domains
InterPro family
InterPro family
| IPR | Annotation | Type | % | Occurence | Specificity |
|---|---|---|---|---|---|
| IPR001938 | Thaumatin, pathogenesis-related | Family | 95 | (413) | N |
Other InterPro signatures
Other InterPro signatures
No other significant IPR (i.e. > 25%)
Domain architecture
Domain architecture
Representative InterPro domains - Consensus schema (alpha version)
Representative InterPro domains - Consensus schema (alpha version)
Protein list
Build your own display:
Phylogenomic analysis
Warning: Please note that the gene tree was reconstructed using PhyML with no optimization (bioNJ). Gene tree with more robust parameters is being processed and will be updated very soon
