| Family ID | 25337 |
| Family name | N/A |
| Synonym(s) | |
| Cross-reference(s) |
|
Curation status  |
|
| Phylogenetic analyzes | Not available |
Link to GreenPhyl V1.0 : 25337
Family structure
| Clustering level | Family id (number of sequences) |
|---|---|
| 1 | 21317 (203) |
| 2 | 25337 (199) |
| 3 | 30839 (199) |
| 4 | 36509 (193) |
Info:
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Annotated gene families at the different levels are underlined. Gene family name pops up when you mouse over.
- Gene families are coloured in blue when the phylogenetic analyses are available.
Family composition
Total : 199
"
| Species | Number |
| Selaginella moellendorffii | 15 |
| Oryza sativa | 14 |
| Brachypodium distachyon | 6 |
| Zea mays | 18 |
| Sorghum bicolor | 13 |
| Vitis vinifera | 13 |
| Arabidopsis thaliana | 17 |
| Carica papaya | 11 |
| Populus trichocarpa | 22 |
| Ricinus communis | 12 |
| Glycine max | 37 |
| Medicago truncatula | 21 |
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"
| Species | Number |
| Selaginella moellendorffii | 0.4323 |
| Oryza sativa | 0.2077 |
| Brachypodium distachyon | 0.1351 |
| Zea mays | 0.3348 |
| Sorghum bicolor | 0.3578 |
| Vitis vinifera | 0.4272 |
| Arabidopsis thaliana | 0.5120 |
| Carica papaya | 0.4439 |
| Populus trichocarpa | 0.4829 |
| Ricinus communis | 0.3844 |
| Glycine max | 0.4883 |
| Medicago truncatula | 0.5419 |
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Information to display :
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Protein domains
InterPro family
InterPro family
| IPR | Annotation | Type | % | Occurence | Specificity |
|---|---|---|---|---|---|
| IPR001860 | Glycoside hydrolase, family 34 | Family | 1 | (1) | Y |
| IPR003854 | Gibberellin regulated protein | Family | 85 | (169) | N |
Other InterPro signatures
Other InterPro signatures
No other significant IPR (i.e. > 25%)
Domain architecture
Domain architecture
Representative InterPro domains - Consensus schema (alpha version)
Representative InterPro domains - Consensus schema (alpha version)
Protein list
Build your own display:
Phylogenomic analysis
Warning: Please note that the gene tree was reconstructed using PhyML with no optimization (bioNJ). Gene tree with more robust parameters is being processed and will be updated very soon
