| Family ID | 26300 |
| Family name | Malate Dehydrogenase, NAD/NADP Subfamily |
| Synonym(s) | |
| Cross-reference(s) |
|
Curation status  |
|
| Phylogenetic analyzes | Not available |
Link to GreenPhyl V1.0 : 26300
Family structure
| Clustering level | Family id (number of sequences) |
|---|---|
| 1 | 21228 (240) |
| 2 | 26300 (82) |
| 3 | 33175 (55) 34191 (27) |
| 4 | 38784 (55) 39811 (27) |
Info:
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Annotated gene families at the different levels are underlined. Gene family name pops up when you mouse over.
- Gene families are coloured in blue when the phylogenetic analyses are available.
Family composition
Total : 82
"
| Species | Number |
| Cyanidioschyzon merolae | 2 |
| Chlamydomonas reinhardtii | 2 |
| Ostreococcus tauri | 2 |
| Physcomitrella patens | 4 |
| Selaginella moellendorffii | 5 |
| Oryza sativa | 5 |
| Brachypodium distachyon | 3 |
| Zea mays | 7 |
| Sorghum bicolor | 5 |
| Vitis vinifera | 7 |
| Arabidopsis thaliana | 6 |
| Carica papaya | 3 |
| Populus trichocarpa | 14 |
| Ricinus communis | 4 |
| Glycine max | 10 |
| Medicago truncatula | 3 |
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"
| Species | Number |
| Cyanidioschyzon merolae | 0.3989 |
| Chlamydomonas reinhardtii | 0.1197 |
| Ostreococcus tauri | 0.2589 |
| Physcomitrella patens | 0.1113 |
| Selaginella moellendorffii | 0.1441 |
| Oryza sativa | 0.0742 |
| Brachypodium distachyon | 0.0676 |
| Zea mays | 0.1302 |
| Sorghum bicolor | 0.1376 |
| Vitis vinifera | 0.2300 |
| Arabidopsis thaliana | 0.1807 |
| Carica papaya | 0.1211 |
| Populus trichocarpa | 0.3073 |
| Ricinus communis | 0.1281 |
| Glycine max | 0.1320 |
| Medicago truncatula | 0.0774 |
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Information to display :
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Protein domains
InterPro family
InterPro family
| IPR | Annotation | Type | % | Occurence | Specificity |
|---|---|---|---|---|---|
| IPR011274 | Malate dehydrogenase, NAD-dependent, cytosolic | Family | 35 | (29) | Y |
| IPR001236 | Lactate/malate dehydrogenase | Family | 85 | (70) | N |
| IPR010945 | Malate dehydrogenase, NAD/NADP | Family | 79 | (65) | Y |
| IPR011273 | Malate dehydrogenase, NADP-dependent, plants | Family | 28 | (23) | Y |
Other InterPro signatures
Other InterPro signatures
| IPR | Annotation | Type | % | Occurence | Specificity |
| IPR016040 | NAD(P)-binding domain | Domain | 66 | (54) | N |
| IPR001252 | Malate dehydrogenase, active site | Active_site | 71 | (58) | N |
| IPR015955 | Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | Domain | 70 | (57) | N |
Domain architecture
Domain architecture
Representative InterPro domains - Consensus schema (alpha version)
Representative InterPro domains - Consensus schema (alpha version)
Protein list
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Phylogenomic analysis
Warning: Please note that the gene tree was reconstructed using PhyML with no optimization (bioNJ). Gene tree with more robust parameters is being processed and will be updated very soon
