| Family ID | 28087 |
| Family name | Fumarate Hydratase, Class II Family |
| Synonym(s) | |
| Cross-reference(s) |
|
| Comment | IPR family, KEGG description |
Curation status  |
|
| Phylogenetic analyzes | Not available |
Link to GreenPhyl V1.0 : 28087
Family structure
| Clustering level | Family id (number of sequences) |
|---|---|
| 1 | 22269 (64) |
| 2 | 28087 (36) |
| 3 | 33625 (36) |
| 4 | 39224 (36) |
Info:
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Annotated gene families at the different levels are underlined. Gene family name pops up when you mouse over.
- Gene families are coloured in blue when the phylogenetic analyses are available.
Family composition
Total : 36
"
| Species | Number |
| Cyanidioschyzon merolae | 1 |
| Ostreococcus tauri | 2 |
| Physcomitrella patens | 3 |
| Selaginella moellendorffii | 2 |
| Oryza sativa | 1 |
| Brachypodium distachyon | 1 |
| Zea mays | 1 |
| Sorghum bicolor | 3 |
| Vitis vinifera | 2 |
| Arabidopsis thaliana | 5 |
| Carica papaya | 2 |
| Populus trichocarpa | 3 |
| Ricinus communis | 1 |
| Glycine max | 7 |
| Medicago truncatula | 2 |
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"
| Species | Number |
| Cyanidioschyzon merolae | 0.1994 |
| Ostreococcus tauri | 0.2589 |
| Physcomitrella patens | 0.0835 |
| Selaginella moellendorffii | 0.0576 |
| Oryza sativa | 0.0148 |
| Brachypodium distachyon | 0.0225 |
| Zea mays | 0.0186 |
| Sorghum bicolor | 0.0826 |
| Vitis vinifera | 0.0657 |
| Arabidopsis thaliana | 0.1506 |
| Carica papaya | 0.0807 |
| Populus trichocarpa | 0.0659 |
| Ricinus communis | 0.0320 |
| Glycine max | 0.0924 |
| Medicago truncatula | 0.0516 |
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Information to display :
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Protein domains
InterPro family
InterPro family
| IPR | Annotation | Type | % | Occurence | Specificity |
|---|---|---|---|---|---|
| IPR005677 | Fumarate hydratase, class II | Family | 67 | (24) | Y |
Other InterPro signatures
Other InterPro signatures
| IPR | Annotation | Type | % | Occurence | Specificity |
| IPR008948 | L-Aspartase-like | Domain | 56 | (20) | N |
| IPR018951 | Fumarase C, C-terminal | Domain | 31 | (11) | Y |
| IPR000169 | Peptidase, cysteine peptidase active site | Active_site | 31 | (11) | N |
| IPR000362 | Fumarate lyase | Domain | 92 | (33) | N |
Domain architecture
Domain architecture
Representative InterPro domains - Consensus schema (alpha version)
Representative InterPro domains - Consensus schema (alpha version)
Protein list
Build your own display:
Phylogenomic analysis
Warning: Please note that the gene tree was reconstructed using PhyML with no optimization (bioNJ). Gene tree with more robust parameters is being processed and will be updated very soon
