| Family ID | 28234 |
| Family name | Translation Initiation Factor IF-2 Family |
| Synonym(s) | |
| Cross-reference(s) |
|
| Comment | IPR family, KEGG description |
Curation status  |
|
| Phylogenetic analyzes | Not available |
Link to GreenPhyl V1.0 : 28234
Family structure
| Clustering level | Family id (number of sequences) |
|---|---|
| 1 | 20925 (835) |
| 2 | 28234 (50) |
| 3 | 33790 (50) |
| 4 |
Info:
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Annotated gene families at the different levels are underlined. Gene family name pops up when you mouse over.
- Gene families are coloured in blue when the phylogenetic analyses are available.
Family composition
Total : 50
"
| Species | Number |
| Cyanidioschyzon merolae | 1 |
| Chlamydomonas reinhardtii | 2 |
| Ostreococcus tauri | 2 |
| Physcomitrella patens | 4 |
| Selaginella moellendorffii | 5 |
| Oryza sativa | 4 |
| Brachypodium distachyon | 3 |
| Zea mays | 6 |
| Sorghum bicolor | 3 |
| Vitis vinifera | 4 |
| Arabidopsis thaliana | 2 |
| Carica papaya | 1 |
| Populus trichocarpa | 6 |
| Ricinus communis | 1 |
| Glycine max | 4 |
| Medicago truncatula | 2 |
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"
| Species | Number |
| Cyanidioschyzon merolae | 0.1994 |
| Chlamydomonas reinhardtii | 0.1197 |
| Ostreococcus tauri | 0.2589 |
| Physcomitrella patens | 0.1113 |
| Selaginella moellendorffii | 0.1441 |
| Oryza sativa | 0.0594 |
| Brachypodium distachyon | 0.0676 |
| Zea mays | 0.1116 |
| Sorghum bicolor | 0.0826 |
| Vitis vinifera | 0.1314 |
| Arabidopsis thaliana | 0.0602 |
| Carica papaya | 0.0404 |
| Populus trichocarpa | 0.1317 |
| Ricinus communis | 0.0320 |
| Glycine max | 0.0528 |
| Medicago truncatula | 0.0516 |
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Information to display :
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Protein domains
InterPro family
InterPro family
| IPR | Annotation | Type | % | Occurence | Specificity |
|---|---|---|---|---|---|
| IPR000178 | Initiation factor 2 | Family | 54 | (27) | Y |
Other InterPro signatures
Other InterPro signatures
| IPR | Annotation | Type | % | Occurence | Specificity |
| IPR006847 | Translation initiation factor IF-2, N-terminal | Domain | 28 | (14) | Y |
| IPR005225 | Small GTP-binding protein | Domain | 62 | (31) | N |
| IPR004161 | Translation elongation factor EFTu/EF1A, domain 2 | Domain | 60 | (30) | N |
| IPR015760 | Translation initiation factor 2 related | Domain | 62 | (31) | N |
| IPR000795 | Protein synthesis factor, GTP-binding | Domain | 70 | (35) | N |
| IPR009000 | Translation elongation/initiation factor/Ribosomal, beta-barrel | Domain | 30 | (15) | N |
Domain architecture
Domain architecture
Representative InterPro domains - Consensus schema (alpha version)
Representative InterPro domains - Consensus schema (alpha version)
Protein list
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Phylogenomic analysis
Warning: Please note that the gene tree was reconstructed using PhyML with no optimization (bioNJ). Gene tree with more robust parameters is being processed and will be updated very soon
