| Family ID | 29002 |
| Family name | Ubiquitin Carboxyl-Terminal Hydrolase Family Containing Ubiquitin Domain |
| Synonym(s) | |
| Cross-reference(s) |
|
| Comment | IPR family, KEGG description |
Curation status  |
|
| Phylogenetic analyzes | Not available |
Link to GreenPhyl V1.0 : 29002
Family structure
| Clustering level | Family id (number of sequences) |
|---|---|
| 1 | 20889 (776) |
| 2 | 29002 (26) |
| 3 | 34589 (26) |
| 4 | 40235 (26) |
Info:
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Annotated gene families at the different levels are underlined. Gene family name pops up when you mouse over.
- Gene families are coloured in blue when the phylogenetic analyses are available.
Family composition
Total : 26
"
| Species | Number |
| Cyanidioschyzon merolae | 1 |
| Chlamydomonas reinhardtii | 1 |
| Ostreococcus tauri | 1 |
| Physcomitrella patens | 1 |
| Selaginella moellendorffii | 2 |
| Oryza sativa | 1 |
| Brachypodium distachyon | 2 |
| Zea mays | 5 |
| Sorghum bicolor | 1 |
| Vitis vinifera | 1 |
| Arabidopsis thaliana | 3 |
| Carica papaya | 2 |
| Populus trichocarpa | 2 |
| Ricinus communis | 1 |
| Glycine max | 2 |
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"
| Species | Number |
| Cyanidioschyzon merolae | 0.1994 |
| Chlamydomonas reinhardtii | 0.0599 |
| Ostreococcus tauri | 0.1294 |
| Physcomitrella patens | 0.0278 |
| Selaginella moellendorffii | 0.0576 |
| Oryza sativa | 0.0148 |
| Brachypodium distachyon | 0.0450 |
| Zea mays | 0.0930 |
| Sorghum bicolor | 0.0275 |
| Vitis vinifera | 0.0329 |
| Arabidopsis thaliana | 0.0904 |
| Carica papaya | 0.0807 |
| Populus trichocarpa | 0.0439 |
| Ricinus communis | 0.0320 |
| Glycine max | 0.0264 |
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Information to display :
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Protein domains
InterPro family
InterPro family
No IPR family
Other InterPro signatures
Other InterPro signatures
| IPR | Annotation | Type | % | Occurence | Specificity |
| IPR018200 | Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site | Conserved_site | 54 | (14) | N |
| IPR019954 | Ubiquitin conserved site | Conserved_site | 27 | (7) | N |
| IPR000626 | Ubiquitin | Domain | 88 | (23) | N |
| IPR001394 | Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 | Domain | 92 | (24) | N |
| IPR019955 | Ubiquitin supergroup | Domain | 50 | (13) | N |
Domain architecture
Domain architecture
Representative InterPro domains - Consensus schema (alpha version)
Representative InterPro domains - Consensus schema (alpha version)
Protein list
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Phylogenomic analysis
Warning: Please note that the gene tree was reconstructed using PhyML with no optimization (bioNJ). Gene tree with more robust parameters is being processed and will be updated very soon
