| Family ID | 33118 |
| Family name | N/A |
| Synonym(s) | |
| Cross-reference(s) |
|
Curation status  |
|
| Phylogenetic analyzes | Not available |
Link to GreenPhyl V1.0 : 33118
Family structure
| Clustering level | Family id (number of sequences) |
|---|---|
| 1 | 21439 (134) |
| 2 | 25871 (110) |
| 3 | 33118 (40) |
| 4 | 38729 (40) |
Info:
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Annotated gene families at the different levels are underlined. Gene family name pops up when you mouse over.
- Gene families are coloured in blue when the phylogenetic analyses are available.
Family composition
Total : 40
"
| Species | Number |
| Physcomitrella patens | 4 |
| Selaginella moellendorffii | 6 |
| Oryza sativa | 5 |
| Brachypodium distachyon | 3 |
| Zea mays | 11 |
| Sorghum bicolor | 4 |
| Vitis vinifera | 3 |
| Carica papaya | 1 |
| Populus trichocarpa | 2 |
| Ricinus communis | 1 |
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"
| Species | Number |
| Physcomitrella patens | 0.1113 |
| Selaginella moellendorffii | 0.1729 |
| Oryza sativa | 0.0742 |
| Brachypodium distachyon | 0.0676 |
| Zea mays | 0.2046 |
| Sorghum bicolor | 0.1101 |
| Vitis vinifera | 0.0986 |
| Carica papaya | 0.0404 |
| Populus trichocarpa | 0.0439 |
| Ricinus communis | 0.0320 |
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Information to display :
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Protein domains
InterPro family
InterPro family
| IPR | Annotation | Type | % | Occurence | Specificity |
|---|---|---|---|---|---|
| IPR008598 | Drought induced 19 | Family | 88 | (35) | N |
Other InterPro signatures
Other InterPro signatures
| IPR | Annotation | Type | % | Occurence | Specificity |
| IPR015880 | Zinc finger, C2H2-like | Domain | 55 | (22) | N |
Domain architecture
Domain architecture
Representative InterPro domains - Consensus schema (alpha version)
Representative InterPro domains - Consensus schema (alpha version)
Protein list
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Phylogenomic analysis
Warning: Please note that the gene tree was reconstructed using PhyML with no optimization (bioNJ). Gene tree with more robust parameters is being processed and will be updated very soon
