| Family ID | 36699 |
| Family name | N/A |
| Synonym(s) | |
| Cross-reference(s) |
|
Curation status  |
|
| Phylogenetic analyzes | Not available |
Link to GreenPhyl V1.0 : 36699
Family structure
| Clustering level | Family id (number of sequences) |
|---|---|
| 1 | 21589 (152) |
| 2 | 25603 (144) |
| 3 | 31079 (144) |
| 4 | 36699 (144) |
Info:
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Annotated gene families at the different levels are underlined. Gene family name pops up when you mouse over.
- Gene families are coloured in blue when the phylogenetic analyses are available.
Family composition
Total : 144
"
| Species | Number |
| Cyanidioschyzon merolae | 3 |
| Chlamydomonas reinhardtii | 3 |
| Ostreococcus tauri | 3 |
| Physcomitrella patens | 9 |
| Selaginella moellendorffii | 8 |
| Oryza sativa | 9 |
| Brachypodium distachyon | 5 |
| Zea mays | 11 |
| Sorghum bicolor | 5 |
| Vitis vinifera | 14 |
| Arabidopsis thaliana | 10 |
| Carica papaya | 5 |
| Populus trichocarpa | 13 |
| Ricinus communis | 7 |
| Glycine max | 33 |
| Medicago truncatula | 6 |
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"
| Species | Number |
| Cyanidioschyzon merolae | 0.5983 |
| Chlamydomonas reinhardtii | 0.1796 |
| Ostreococcus tauri | 0.3883 |
| Physcomitrella patens | 0.2504 |
| Selaginella moellendorffii | 0.2306 |
| Oryza sativa | 0.1335 |
| Brachypodium distachyon | 0.1126 |
| Zea mays | 0.2046 |
| Sorghum bicolor | 0.1376 |
| Vitis vinifera | 0.4600 |
| Arabidopsis thaliana | 0.3012 |
| Carica papaya | 0.2018 |
| Populus trichocarpa | 0.2854 |
| Ricinus communis | 0.2242 |
| Glycine max | 0.4355 |
| Medicago truncatula | 0.1548 |
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Information to display :
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Protein domains
InterPro family
InterPro family
| IPR | Annotation | Type | % | Occurence | Specificity |
|---|---|---|---|---|---|
| IPR001085 | Serine hydroxymethyltransferase | Family | 92 | (132) | N |
Other InterPro signatures
Other InterPro signatures
| IPR | Annotation | Type | % | Occurence | Specificity |
| IPR019798 | Serine hydroxymethyltransferase, pyridoxal phosphate binding site | Binding_site | 33 | (48) | Y |
| IPR015424 | Pyridoxal phosphate-dependent transferase, major region | Domain | 65 | (93) | N |
| IPR015421 | Pyridoxal phosphate-dependent transferase, major region, subdomain 1 | Domain | 59 | (85) | N |
Domain architecture
Domain architecture
Representative InterPro domains - Consensus schema (alpha version)
Representative InterPro domains - Consensus schema (alpha version)
Protein list
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Phylogenomic analysis
Warning: Please note that the gene tree was reconstructed using PhyML with no optimization (bioNJ). Gene tree with more robust parameters is being processed and will be updated very soon
