| Family ID | 41988 |
| Family name | 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase Family |
| Synonym(s) | |
| Cross-reference(s) | |
Curation status  |
|
| Phylogenetic analyzes | Performed |
Link to GreenPhyl V1.0 : 41988
Family structure
| Clustering level | Family id (number of sequences) |
|---|---|
| 1 | 41988 (34) |
| 2 | |
| 3 | |
| 4 |
Info:
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Annotated gene families at the different levels are underlined. Gene family name pops up when you mouse over.
- Gene families are coloured in blue when the phylogenetic analyses are available.
Family composition
Total : 34
"
| Species | Number |
| Cyanidioschyzon merolae | 1 |
| Chlamydomonas reinhardtii | 1 |
| Ostreococcus tauri | 1 |
| Physcomitrella patens | 2 |
| Selaginella moellendorffii | 4 |
| Oryza sativa | 2 |
| Brachypodium distachyon | 1 |
| Zea mays | 5 |
| Sorghum bicolor | 2 |
| Vitis vinifera | 1 |
| Arabidopsis thaliana | 1 |
| Carica papaya | 1 |
| Populus trichocarpa | 3 |
| Ricinus communis | 1 |
| Glycine max | 7 |
| Medicago truncatula | 1 |
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"
| Species | Number |
| Cyanidioschyzon merolae | 0.1994 |
| Chlamydomonas reinhardtii | 0.0599 |
| Ostreococcus tauri | 0.1294 |
| Physcomitrella patens | 0.0557 |
| Selaginella moellendorffii | 0.1153 |
| Oryza sativa | 0.0297 |
| Brachypodium distachyon | 0.0225 |
| Zea mays | 0.0930 |
| Sorghum bicolor | 0.0550 |
| Vitis vinifera | 0.0329 |
| Arabidopsis thaliana | 0.0301 |
| Carica papaya | 0.0404 |
| Populus trichocarpa | 0.0659 |
| Ricinus communis | 0.0320 |
| Glycine max | 0.0924 |
| Medicago truncatula | 0.0258 |
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Information to display :
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Protein domains
InterPro family
InterPro family
| IPR | Annotation | Type | % | Occurence | Specificity |
|---|---|---|---|---|---|
| IPR003821 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | Family | 71 | (24) | Y |
Other InterPro signatures
Other InterPro signatures
| IPR | Annotation | Type | % | Occurence | Specificity |
| IPR013512 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal | Domain | 79 | (27) | Y |
| IPR013644 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal | Domain | 82 | (28) | Y |
| IPR016040 | NAD(P)-binding domain | Domain | 26 | (9) | N |
Domain architecture
Domain architecture
Representative InterPro domains - Consensus schema (alpha version)
Representative InterPro domains - Consensus schema (alpha version)
Protein list
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Phylogenomic analysis
Warning: Please note that the gene tree was reconstructed using PhyML with no optimization (bioNJ). Gene tree with more robust parameters is being processed and will be updated very soon
