| Family ID | 42556 |
| Family name | Zinc Finger, CCHC-Type Domain Containing Group |
| Synonym(s) | |
| Cross-reference(s) |
|
Curation status  |
|
| Phylogenetic analyzes | Performed |
Link to GreenPhyl V1.0 : 42556
Family structure
| Clustering level | Family id (number of sequences) |
|---|---|
| 1 | 42556 (55) |
| 2 | |
| 3 | |
| 4 |
Info:
- Sequences are clustered and classified at 4 levels (from less to more stringent).
- The number between parenthesis indicates the number of sequences in the cluster.
- Annotated gene families at the different levels are underlined. Gene family name pops up when you mouse over.
- Gene families are coloured in blue when the phylogenetic analyses are available.
Family composition
Total : 55
"
| Species | Number |
| Physcomitrella patens | 1 |
| Selaginella moellendorffii | 5 |
| Oryza sativa | 1 |
| Zea mays | 2 |
| Sorghum bicolor | 1 |
| Vitis vinifera | 39 |
| Arabidopsis thaliana | 1 |
| Carica papaya | 1 |
| Populus trichocarpa | 1 |
| Ricinus communis | 1 |
| Glycine max | 1 |
| Medicago truncatula | 1 |
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"
| Species | Number |
| Physcomitrella patens | 0.0278 |
| Selaginella moellendorffii | 0.1441 |
| Oryza sativa | 0.0148 |
| Zea mays | 0.0372 |
| Sorghum bicolor | 0.0275 |
| Vitis vinifera | 1.2815 |
| Arabidopsis thaliana | 0.0301 |
| Carica papaya | 0.0404 |
| Populus trichocarpa | 0.0220 |
| Ricinus communis | 0.0320 |
| Glycine max | 0.0132 |
| Medicago truncatula | 0.0258 |
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Information to display :
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Gene name UniProt KEGG InterPro Annotation Gene Ontology PubMed Filter Status
Protein domains
InterPro family
InterPro family
No IPR family
Other InterPro signatures
Other InterPro signatures
| IPR | Annotation | Type | % | Occurence | Specificity |
| IPR001878 | Zinc finger, CCHC-type | Domain | 47 | (26) | N |
Domain architecture
Domain architecture
Representative InterPro domains - Consensus schema (alpha version)
Representative InterPro domains - Consensus schema (alpha version)
No representative domains
Protein list
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Phylogenomic analysis
Warning: Please note that the gene tree was reconstructed using PhyML with no optimization (bioNJ). Gene tree with more robust parameters is being processed and will be updated very soon
