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Family GPV2_15_1


Family ID
Zinc finger (C3HC4-type RING finger) family [OBSOLETE]
GPV2_15_1 OBSOLETE  add to my list
Family name Zinc finger (C3HC4-type RING finger) family
Creation date (last update: 2014-05-27 09:51:25)
Level 1
Owner greenphyl_v2
Evidence PubMed
Access public - read only
Family description / comments Paper:Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome.
Sequences 2782




Level Family ID (number of sequences)
1 GPV2_15_1 (2782)
2 GPV2_17_2 (1986)
Multidrug resistance-associated subfamily 1 (MRP) [OBSOLETE]
GPV2_102_2 (566)
RING-H2 Cluster 2.3 [OBSOLETE]
GPV2_304_2 (140) GPV2_434_2 (142)
RING finger subfamily 7 [OBSOLETE]
GPV2_581_2 (44)
Ring finger subfamily 8 [OBSOLETE]
GPV2_1858_2 (7) GPV2_3093_2 (19)
RING-H2 Cluster 2.17 [OBSOLETE]
GPV2_3181_2 (24)
RING-H2 Cluster 2.22 [OBSOLETE]
GPV2_3182_2 (13)
Ring finger subfamily 5 [OBSOLETE]
GPV2_3183_2 (9)
RING finger subfamily 9 [OBSOLETE]
GPV2_3184_2 (19)
Heterogenous ? [OBSOLETE]
GPV2_3185_2 (35)
Ring-box 1 family [OBSOLETE]
GPV2_3186_2 (18) GPV2_4130_2 (26) GPV2_4177_2 (13) GPV2_4178_2 (20)
Ring finger subfamily 10 [OBSOLETE]
GPV2_4234_2 (3)
Ring finger subfamily 11 [OBSOLETE]
GPV2_4235_2 (20) GPV2_4236_2 (23) GPV2_4312_2 (18) GPV2_5208_2 (3)
3
RING finger subfamily 1 (ALT) [OBSOLETE]
GPV2_24_3 (1443)
RING finger subfamily 2 [OBSOLETE]
GPV2_86_3 (363) GPV2_310_3 (128)
RING-H2 Cluster 2.4 [OBSOLETE]
GPV2_779_3 (62) GPV2_799_3 (56)
RING finger subfamily with Protease-associated PA domain [OBSOLETE]
GPV2_1078_3 (62)
RING finger subfamily with unknown function DUF1117 domain [OBSOLETE]
GPV2_2002_3 (49)
RING finger subfamily 3 [OBSOLETE]
GPV2_2005_3 (22)
RING finger subfamily 4 [OBSOLETE]
GPV2_4109_3 (12) GPV2_4282_3 (5) GPV2_103_3 (566) GPV2_310_3 (128) GPV2_1926_3 (21) GPV2_2003_3 (11) GPV2_2407_3 (10) GPV2_2432_3 (24) GPV2_763_3 (83) GPV2_1216_3 (46) GPV2_4287_3 (13) GPV2_310_3 (128) GPV2_2407_3 (10) GPV2_4951_3 (3) GPV2_3073_3 (19) GPV2_3171_3 (24) GPV2_4284_3 (11) GPV2_2004_3 (9) GPV2_3172_3 (19) GPV2_3173_3 (35) GPV2_3176_3 (18) GPV2_4180_3 (26) GPV2_4237_3 (13) GPV2_4285_3 (3) GPV2_3174_3 (21) GPV2_4286_3 (23) GPV2_4373_3 (18)
4 GPV2_31_4 (1059) GPV2_106_4 (272) GPV2_548_4 (84) GPV2_598_4 (52) GPV2_808_4 (75) GPV2_1284_4 (40) GPV2_3057_4 (4) GPV2_3105_4 (30) GPV2_4287_4 (23) GPV2_106_4 (272) GPV2_1560_4 (53) GPV2_1776_4 (31) GPV2_4286_4 (8) GPV2_764_4 (72) GPV2_1284_4 (40) GPV2_1325_4 (20) GPV2_1905_4 (17) GPV2_4284_4 (8) GPV2_4379_4 (25) GPV2_550_4 (67) GPV2_550_4 (67) GPV2_921_4 (49)
RING-H2 Cluster 2.10 [OBSOLETE]
GPV2_1006_4 (62) GPV2_1560_4 (53) GPV2_548_4 (84) GPV2_4083_4 (12) GPV2_4280_4 (5) GPV2_95_4 (561) GPV2_764_4 (72) GPV2_1284_4 (40) GPV2_1325_4 (20) GPV2_1905_4 (17) GPV2_4284_4 (8) GPV2_4379_4 (25) GPV2_1284_4 (40) GPV2_1922_4 (11) GPV2_1905_4 (17) GPV2_764_4 (72)
RING-H2 Cluster 2.7 [OBSOLETE]
GPV2_786_4 (68)
Ring finger subfamily (rhb1a) [OBSOLETE]
GPV2_3108_4 (28)
RING finger subfamily 6 [OBSOLETE]
GPV2_1152_4 (46) GPV2_3108_4 (28) GPV2_764_4 (72) GPV2_1284_4 (40) GPV2_1325_4 (20) GPV2_1905_4 (17) GPV2_4284_4 (8) GPV2_4379_4 (25) GPV2_1905_4 (17) GPV2_4149_4 (7) GPV2_3104_4 (24) GPV2_4282_4 (11)
Ring-h2 cluster 2.6 [OBSOLETE]
GPV2_2357_4 (8) GPV2_3106_4 (19) GPV2_4285_4 (32) GPV2_3109_4 (18) GPV2_4172_4 (26) GPV2_4283_4 (3) GPV2_3107_4 (21) GPV2_4380_4 (18)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 2782
Species Count (w/o splice) Count (w/ splice)
12 12
11 11
9 9
77 77
128 128
271 326
214 214
256 336
276 290
147 147
242 269
123 123
288 288
124 124
109 109
283 319


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