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Family GP000901_V3


Family ID
3-oxo-5-alpha-steroid 4-dehydrogenase family [OBSOLETE]
GP000901_V3 OBSOLETE  add to my list
Family name 3-oxo-5-alpha-steroid 4-dehydrogenase family
Creation date (last update: 2016-09-27 12:14:43)
Level 1
Type family
Owner greenphyl_v3
Evidence IEA:InterPro
Access public - read only
Family description / comments
Sequences 161
Associated GPv4 family
3-oxo-5-alpha-steroid 4-dehydrogenase family (plant-specificity: 9%)
GP000901




Level Family ID (number of sequences)
1 GP000901_V3 (161)
2
(plant-specificity: 22%) [OBSOLETE]
GP018242_V3 (49)
(plant-specificity: 14%) [OBSOLETE]
GP018551_V3 (45) GP019388_V3 (38)
Steroid reductase subfamily [OBSOLETE]
GP020953_V3 (29)
3
(plant-specificity: 11%) [OBSOLETE]
GP043109_V3 (47) GP061683_V3 (2)
(plant-specificity: 14%) [OBSOLETE]
GP043281_V3 (45) GP044255_V3 (38) GP045991_V3 (29)
4
(plant-specificity: 11%) [OBSOLETE]
GP072604_V3 (47) GP095426_V3 (2)
(plant-specificity: 14%) [OBSOLETE]
GP072789_V3 (45) GP073800_V3 (38) GP075640_V3 (29)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 161
Species Count (w/o splice) Count (w/ splice)
2 2
4 4
3 3
7 7
6 6
6 6
5 5
5 6
5 6
10 15
4 4
8 8
6 6
3 3
10 10
15 15
5 5
7 7
8 10
15 15
4 4
8 14


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[Masking step 1 details] [Masking step 2 details] [Filtration details]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
161 146 (91%) 146 (91%) [78; 280; 485] ~280 149 149