WARNING: The website is evolving to a new and overhauled version in the coming weeks. All user accounts, and their history (custom families) WILL be migrated to the new version (with their actual links). During the migration process, the website will remain in "read-only" mode (no new user accounts and no new custom families).

Documentation

Overview


GreenPhylDB is a web resource for plant comparative and functional genomics

GreenPhylDB comprises complete proteome sequences from the major phylum of plant evolution. The clustering of these proteomes was performed to define a consistent and extensive set of homeomorphic plant families. Based on this, lists of gene families such as plant or species specific families and several tools are provided to facilitate comparative genomics within plant genomes.

Our analyses follow two main steps: gene family clustering and phylogenomic analysis of the generated families. Once a group of sequences (cluster) is validated, phylogenetic analyses are performed to predict homolog relationships such as orthologs and ultraparalogs.

overview