Download GreenPhyl v5 datasets
- Species (species and pangenome species proteins as FASTA files)
- AMBTC_v1.0.faa
- ARATH_Araport11.faa
- BETVU_RefBeet_v1.2.faa
- BRADI_pan.faa
- BRANA_pan.faa
- BRAOL_pan.faa
- BRARR_pan.faa
- CAJCA_Asha_v1.0.faa
- CAPAN_pan.faa
- CHEQI_JGI_v1.0.faa
- CICAR_pan.faa
- CITMA_v1.0.faa
- CITME_v1.0.faa
- CITSI_v2.0.faa
- COCNU_pan.faa
- COFAR_RB_v1.0.faa
- COFCA_v1.0.faa
- CUCME_DHL92_v3.6.1.faa
- CUCSA_pan.faa
- DAUCA_JGI_v2.0.faa
- DIORT_TDr96_F1_v1.0.faa
- ELAGV_RefSeq_v1.0.faa
- FRAVE_v4.0a1.faa
- HELAN_XRQ_v1.2.faa
- HORVU_IBSC_v2.0.faa
- IPOTF_pan.faa
- IPOTR_NSP323.faa
- MAIZE_pan.faa
- MALDO_pan.faa
- MANES_AM560_2_v6.1.faa
- MEDTR_pan.faa
- MUSAC_pan.faa
- MUSBA_Mba1.1.faa
- OLEEU_v1.0.faa
- ORYGL_v1.0.faa
- ORYSA_pan.faa
- PHAVU_v2.0.faa
- PHODC_v3.0.faa
- SACSP_AP85_441_v1.0.faa
- SOLLC_ITAG3.2.faa
- SOLTU_PGSC_v4.03.faa
- SORBI_pan.faa
- SOYBN_pan.faa
- THECC_pan.faa
- TRITU_pan.faa
- VITVI_pan.faa
- MCL (MCL computation files)
- mcl_level1.txt
- MCL clusters for level 1.
- mcl_level2.txt
- MCL clusters for level 2.
- mcl_level3.txt
- MCL clusters for level 3.
- mcl_level4.txt
- MCL clusters for level 4.
- Pangenomes (pangenome computation files)
- BRADI_mapping.txt
- List of genome sequences behind each pan-sequence.
- BRADI_orphans_real.faa
- Genome unmatched sequences.
- BRANA_mapping.txt
- List of genome sequences behind each pan-sequence.
- BRANA_orphans_real.faa
- Genome unmatched sequences.
- BRAOL_mapping.txt
- List of genome sequences behind each pan-sequence.
- BRAOL_orphans_real.faa
- Genome unmatched sequences.
- BRARR_mapping.txt
- List of genome sequences behind each pan-sequence.
- BRARR_orphans_real.faa
- Genome unmatched sequences.
- CAPAN_mapping.txt
- List of genome sequences behind each pan-sequence.
- CAPAN_orphans_real.faa
- Genome unmatched sequences.
- CICAR_mapping.txt
- List of genome sequences behind each pan-sequence.
- CICAR_orphans_real.faa
- Genome unmatched sequences.
- COCNU_mapping.txt
- List of genome sequences behind each pan-sequence.
- COCNU_orphans_real.faa
- Genome unmatched sequences.
- CUCSA_mapping.txt
- List of genome sequences behind each pan-sequence.
- CUCSA_orphans_real.faa
- Genome unmatched sequences.
- IPOTF_mapping.txt
- List of genome sequences behind each pan-sequence.
- IPOTF_orphans_real.faa
- Genome unmatched sequences.
- MAIZE_mapping.txt
- List of genome sequences behind each pan-sequence.
- MAIZE_orphans_real.faa
- Genome unmatched sequences.
- MALDO_mapping.txt
- List of genome sequences behind each pan-sequence.
- MALDO_orphans_real.faa
- Genome unmatched sequences.
- MEDTR_mapping.txt
- List of genome sequences behind each pan-sequence.
- MEDTR_orphans_real.faa
- Genome unmatched sequences.
- MUSAC_mapping.txt
- List of genome sequences behind each pan-sequence.
- MUSAC_orphans_real.faa
- Genome unmatched sequences.
- ORYSA_mapping.txt
- List of genome sequences behind each pan-sequence.
- ORYSA_orphans_real.faa
- Genome unmatched sequences.
- SORBI_mapping.txt
- List of genome sequences behind each pan-sequence.
- SORBI_orphans_real.faa
- Genome unmatched sequences.
- SOYBN_mapping.txt
- List of genome sequences behind each pan-sequence.
- SOYBN_orphans_real.faa
- Genome unmatched sequences.
- THECC_mapping.txt
- List of genome sequences behind each pan-sequence.
- THECC_orphans_real.faa
- Genome unmatched sequences.
- TRITU_mapping.txt
- List of genome sequences behind each pan-sequence.
- TRITU_orphans_real.faa
- Genome unmatched sequences.
- VITVI_mapping.txt
- List of genome sequences behind each pan-sequence.
- VITVI_orphans_real.faa
- Genome unmatched sequences.