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Family GP002400


Family ID GP002400  add to my list RDF
Family name WD40 repeat group  
Comment
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
WD40 repeat group (plant-specificity: 64%)
GP002400 (117)
2 GP015459 (1392) , GP018125 (100) ,
(plant-specificity: 100%)
GP109149 (54) ,
(plant-specificity: 98%)
GP112454 (6)
3 GP040192 (946) , GP042820 (100) ,
(plant-specificity: 99%)
GP054929 (20) ,
(plant-specificity: 98%)
GP123433 (6) , GP128893 (4)
4
(plant-specificity: 97%)
GP080074 (343) , GP072306 (100) ,
(plant-specificity: 99%)
GP086717 (16) ,
(plant-specificity: 98%)
GP137757 (6) , GP141740 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 117
Species Count (w/o splice) Count (w/ splice)
1 1
9 9
2 2
2 2
3 3
3 3
1 1
1 1
2 2
4 4
3 3
1 1
1 1
1 1
1 1
1 3
1 1
1 1
3 3
6 6
2 3
2 2
4 4
3 10
2 2
2 8
1 1
3 3
4 6
4 4
5 5
4 4
5 5
2 2
4 6
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]



Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
117 97 (83%) 50 (43%) [65; 906; 3624] ~963 5158 833