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Family GP002933


Family ID GP002933  add to my list RDF
Family name EF-hand domain containing group  
Comment
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
EF-hand domain containing group (plant-specificity: 77%)
GP002933 (71)
2
(plant-specificity: 94%)
GP019088 (69) ,
(plant-specificity: 40%)
GP113242 (5)
3 GP043911 (69) ,
(plant-specificity: 40%)
GP124600 (5)
4 GP073417 (67) ,
(plant-specificity: 40%)
GP139496 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 71
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
2 3
1 1
1 1
2 2
2 2
2 2
2 2
1 1
2 2
3 3
1 1
3 6
3 3
1 1
1 1
2 2
1 1
1 1
3 3
1 3
1 1
3 9
1 1
4 4
1 2
1 1
1 1
1 1
1 1
1 1
2 3
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
EF-hand domain pair
IPR011992
EF-hand domain pair Domain 62 (44) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011992
DBC1/CARP1 catalytically inactive NUDIX hydrolase domain
IPR025954



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]



Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
71 56 (79%) 34 (48%) [83; 1263; 1989] ~1006 3140 945