WARNING: The website is evolving to a new and overhauled version in the coming weeks. All user accounts, and their history (custom families) WILL be migrated to the new version (with their actual links). During the migration process, the website will remain in "read-only" mode (no new user accounts and no new custom families).

Family GP040511


Family ID GP040511  add to my list RDF
Family name Unannotated cluster  
Family Ontology
Close Hide
molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Signal transduction superfamily (plant-specificity: 60%)
GP000129 (2217)
2
Pseudo-response regulator family
GP015864 (422)
3 GP040511 (332)
4 GP070715 (212) , GP072526 (120)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 332
Species Count (w/o splice) Count (w/ splice)
3 3
8 8
4 7
4 4
1 1
4 4
8 8
9 9
8 8
7 7
4 17
4 4
4 4
4 4
7 14
3 3
3 3
2 2
6 6
6 6
5 8
4 4
22 22
9 21
5 5
6 46
8 8
11 11
2 4
12 12
6 6
9 9
5 5
6 9
10 33
7 7


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Signal transduction response regulator, receiver domain
IPR001789
Signal transduction response regulator, receiver domain Domain 81 (270) No
CheY-like superfamily
IPR011006
CheY-like superfamily Domain 83 (277) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011006 IPR001789
CCT domain
IPR010402



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)