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Family GP000971


Family ID GP000971  add to my list RDF
Family name Pyridoxal phosphate-dependent decarboxylase family  
Cross-reference(s) PMID:
Pyridoxal enzymes: mechanistic diversity and uniformity.
8690703
Family Ontology
Close Hide
molecular_function
glutamate decarboxylase activity
GO:0004351 (57%) - glutamate decarboxylase activity
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016616 (1%) - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
biological_process
glutamate metabolic process
GO:0006536 (57%) - glutamate metabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Pyridoxal phosphate-dependent decarboxylase family (plant-specificity: 9%)
GP000971 (310)
2
Glutamate decarboxylase subfamily
GP016238 (240) ,
(plant-specificity: 19%)
GP019988 (70)
3 GP040726 (240) , GP044940 (70)
4 GP070274 (240) , GP074560 (70)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 310
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
9 9
7 9
2 2
26 26
6 6
6 6
6 6
7 7
7 7
7 13
6 6
8 8
7 7
6 11
6 8
6 6
6 6
6 6
5 5
7 9
5 5
7 7
6 11
4 4
9 19
6 6
10 10
5 9
13 13
8 8
8 8
4 4
8 9
13 16
15 15


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Pyridoxal phosphate-dependent decarboxylase
IPR002129
Pyridoxal phosphate-dependent decarboxylase Family 85 (262) No
Glutamate decarboxylase
IPR010107
Glutamate decarboxylase Family 57 (176) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
IPR015421
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 Domain 81 (251) No
Pyridoxal phosphate-dependent transferase
IPR015424
Pyridoxal phosphate-dependent transferase Domain 88 (274) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR015421 IPR015424 IPR002129 IPR010107


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]



Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
310 270 (87%) 214 (69%) [69; 491; 945] ~417 2023 379