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Family GP000910


Family ID GP000910  add to my list RDF
Family name Phosphoinositide phospholipase family  
Synonym(s) Phospholipase c
Cross-reference(s) PMID:
A gene encoding a phosphatidylinositol-specific phospholipase C is induced by dehydration and salt stress in Arabidopsis thaliana.
7732004 PMID:
The Arabidopsis thaliana genome has multiple divergent forms of phosphoinositol-specific phospholipase C1.
9427559
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Phosphoinositide phospholipase family
GP000910 (311)
2 GP015832 (311)
3 GP040475 (311)
4 GP069910 (311)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 311
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
7 11
2 2
7 7
2 2
7 7
6 6
10 10
11 11
5 7
4 4
6 6
5 5
6 16
6 7
4 4
6 6
7 7
7 7
9 12
10 10
15 15
11 29
6 6
8 19
6 6
8 8
4 6
7 7
12 12
12 12
7 7
7 9
16 20
5 5


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Phosphoinositide phospholipase C
IPR001192
Phosphoinositide phospholipase C Family 86 (268) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
C2 calcium-dependent membrane targeting
IPR000008
C2 calcium-dependent membrane targeting Domain 72 (225) No
Phospholipase C, phosphatidylinositol-specific , X domain
IPR000909
Phospholipase C, phosphatidylinositol-specific , X domain Domain 83 (259) No
Phospholipase C, phosphatidylinositol-specific, Y domain
IPR001711
Phospholipase C, phosphatidylinositol-specific, Y domain Domain 82 (255) No
C2 calcium/lipid-binding domain, CaLB
IPR008973
C2 calcium/lipid-binding domain, CaLB Domain 72 (225) No
EF-hand domain pair
IPR011992
EF-hand domain pair Domain 62 (194) No
PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
IPR017946
PLC-like phosphodiesterase, TIM beta/alpha-barrel domain Domain 89 (276) No
C2 membrane targeting protein
IPR018029
C2 membrane targeting protein Domain 70 (219) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011992 IPR017946 IPR008973 IPR000008 IPR018029 IPR000909 IPR001711
Phospholipase C, phosphoinositol-specific, EF-hand-like
IPR015359 IPR001192



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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
311 254 (82%) 218 (70%) [45; 577; 1250] ~509 3966 490




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