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Family GP000901


Family ID GP000901  add to my list RDF
Family name 3-oxo-5-alpha-steroid 4-dehydrogenase family  
Cross-reference(s) PMID:
A role for brassinosteroids in light-dependent development of Arabidopsis.
8602526
Family Ontology
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molecular_function
3-oxo-5-alpha-steroid 4-dehydrogenase activity
GO:0003865 (11%) - 3-oxo-5-alpha-steroid 4-dehydrogenase activity
biological_process
steroid metabolic process
GO:0008202 (11%) - steroid metabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
3-oxo-5-alpha-steroid 4-dehydrogenase family (plant-specificity: 9%)
GP000901 (305)
2 GP018551 (89) , GP018242 (90) ,
(plant-specificity: 9%)
GP019388 (69) ,
Steroid reductase subfamily (plant-specificity: 9%)
GP020953 (52) , GP117543 (3)
3 GP043281 (89) , GP043109 (90) , GP044255 (69) , GP045991 (50) , GP130743 (3)
4 GP072789 (89) , GP072604 (88) , GP073800 (69) , GP075640 (50) , GP147865 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 305
Species Count (w/o splice) Count (w/ splice)
3 3
4 4
11 11
7 8
6 6
15 15
6 6
6 6
5 5
8 8
5 5
5 6
5 5
4 4
10 10
10 15
4 4
7 7
6 6
8 8
7 7
6 7
5 5
9 9
9 24
10 10
14 20
5 5
7 7
8 10
15 15
6 6
7 7
5 5
5 7
8 12
7 7


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
3-oxo-5-alpha-steroid 4-dehydrogenase
IPR016636
3-oxo-5-alpha-steroid 4-dehydrogenase Family 11 (34) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal
IPR001104
3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal Domain 82 (250) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001104


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
305 268 (88%) 232 (76%) [47; 272; 501] ~265 1110 130




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Species



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