Family GP001445


Family ID GP001445  add to my list RDF
Family name Ribosomal protein s4/s9 family   suggest a name
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ribosomal protein s4/s9 family
GP001445 (265)
2 GP016583 (184) , GP019051 (81)
3 GP041195 (184) , GP043849 (81)
4 GP070595 (184) , GP073358 (81)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 265
Species Count (w/o splice) Count (w/ splice)
2 2
3 3
33 33
10 14
4 4
5 5
3 3
7 7
7 7
5 5
4 4
5 7
5 7
3 3
6 6
9 15
6 6
9 9
3 3
9 9
4 4
3 4
3 3
2 2
9 12
6 6
10 13
4 4
8 8
3 5
13 13
3 3
9 11
3 3
5 5
9 13
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein S4/S9, eukaryotic/archaeal
IPR005710
Ribosomal protein S4/S9, eukaryotic/archaeal Family 53 (140) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ribosomal protein S4/S9, N-terminal
IPR001912
Ribosomal protein S4/S9, N-terminal Domain 77 (205) No
RNA-binding S4 domain
IPR002942
RNA-binding S4 domain Domain 79 (209) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002942 IPR001912 IPR005710


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
265 235 (89%) 205 (77%) [45; 185; 881] ~176 1212 158




for (default: all):
Species



(click on the button above to get your homolog prediction list)