Family GP015175


Family ID GP015175  add to my list RDF
Family name WRKY transcription factor family   suggest a name
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Probable WRKY transcription factor superfamily (plant-specificity: 99%)
GP000094 (3517)
2
WRKY transcription factor family
GP015175 (3446)
3 GP039893 (1576) , GP040200 (612) , GP040237 (372) , GP040089 (440) , GP040289 (377) ,
(plant-specificity: 100%)
GP119877 (21) ,
(plant-specificity: 100%)
GP048656 (13) ,
(plant-specificity: 100%)
GP121119 (17) ,
(plant-specificity: 100%)
GP123443 (9) ,
(plant-specificity: 100%)
GP053550 (5)
4 GP069482 (1515) , GP069666 (444) , GP069663 (399) , GP069746 (374) , GP070261 (192) , GP070690 (180) , GP070435 (163) ,
(plant-specificity: 86%)
GP132738 (32) ,
(plant-specificity: 100%)
GP081839 (17) ,
(plant-specificity: 100%)
GP133767 (15) ,
(plant-specificity: 100%)
GP080260 (13) ,
(plant-specificity: 100%)
GP081999 (13) ,
(plant-specificity: 94%)
GP134633 (11) ,
(plant-specificity: 100%)
GP080748 (10) ,
(plant-specificity: 100%)
GP135436 (9) ,
(plant-specificity: 98%)
GP136042 (8) ,
(plant-specificity: 100%)
GP082882 (7) ,
(plant-specificity: 100%)
GP081926 (6) , GP082987 (6) ,
(plant-specificity: 92%)
GP139316 (5) ,
(plant-specificity: 100%)
GP084907 (5) , GP144289 (3) , GP090950 (3) , GP144761 (3) , GP144874 (3) , GP095021 (3) , GP147583 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 3446
Species Count (w/o splice) Count (w/ splice)
2 2
4 4
33 39
19 19
83 83
34 34
150 150
143 143
110 110
87 87
99 122
85 90
74 74
97 97
129 182
94 95
47 47
86 86
84 84
60 60
71 86
52 52
94 94
118 218
59 59
104 190
62 62
118 118
65 88
154 154
88 88
116 125
68 68
90 102
183 235
99 99


Information to display




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Close InterPro family
* 0 †
IPR Annotation Type % Occurence Specificity
DASH complex subunit Dad4
IPR013959
DASH complex subunit Dad4 Family 1 (1) Yes
Transcription factor, WRKY group IIc
IPR017396
Transcription factor, WRKY group IIc Family 1 (15) Yes
Transcription factor, WRKY group Iie
IPR017412
Transcription factor, WRKY group Iie Family 1 (2) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
DNA-binding WRKY
IPR003657
DNA-binding WRKY Domain 91 (3144) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003657


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Species
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