Family GP015070


Family ID GP015070  add to my list RDF
Family name MIKC subfamily   suggest a name
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
MADS transcription factor family (plant-specificity: 60%)
GP000028 (4022)
2
MIKC subfamily
GP015070 (3183)
3 GP039797 (2454) , GP039981 (614) ,
(plant-specificity: 30%)
GP118882 (82) ,
(plant-specificity: 100%)
GP049052 (58) ,
(plant-specificity: 100%)
GP122939 (8) ,
(plant-specificity: 100%)
GP050585 (8) ,
(plant-specificity: 100%)
GP124768 (5) , GP125813 (4) , GP057733 (3) , GP129699 (3)
4
MIKC/Ma-I group
GP069330 (1881) , GP069513 (578) ,
(plant-specificity: 30%)
GP093174 (501) , GP072716 (82) ,
(plant-specificity: 63%)
GP082827 (40) ,
(plant-specificity: 100%)
GP133351 (18) ,
(plant-specificity: 95%)
GP133395 (18) ,
(plant-specificity: 70%)
GP133718 (15) ,
(plant-specificity: 73%)
GP135544 (9) ,
(plant-specificity: 100%)
GP081064 (8) ,
(plant-specificity: 100%)
GP136312 (8) ,
(plant-specificity: 66%)
GP138218 (6) ,
(plant-specificity: 65%)
GP139005 (5) , GP139095 (5) ,
(plant-specificity: 84%)
GP086266 (5) , GP139515 (5) ,
(plant-specificity: 100%)
GP139705 (5) , GP140983 (4) , GP141453 (4) , GP144424 (3) , GP097378 (3) , GP099380 (3) , GP146640 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 3183
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
7 7
12 17
15 15
97 97
29 29
81 81
78 78
64 64
64 64
61 92
57 78
43 43
60 60
80 154
53 60
58 58
121 121
103 103
56 56
71 111
151 165
102 102
115 269
65 65
94 180
52 52
93 93
47 73
140 140
83 83
111 113
52 52
67 88
151 237
80 80


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Transcription factor, MADS-box
IPR002100
Transcription factor, MADS-box Domain 82 (2596) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002100
Transcription factor, K-box
IPR002487



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