Family GP002479


Family ID GP002479  add to my list RDF
Family name Peptidyl-prolyl cis-trans isomerase family   suggest a name
Synonym(s) Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
Cross-reference(s) PMID:
The Arabidopsis thaliana PIN1At gene encodes a single-domain phosphorylation-dependent peptidyl prolyl cis/trans isomerase.
10744752 PMID:
Sequence-specific 1H, 13C and 15N chemical shift backbone NMR assignment and secondary structure of the Arabidopsis thaliana PIN1At protein.
10959635
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Peptidyl-prolyl cis-trans isomerase family (plant-specificity: 40%)
GP002479 (228)
2 GP019724 (67) , GP019789 (60) , GP020885 (55) ,
(plant-specificity: 92%)
GP026579 (21) ,
(plant-specificity: 100%)
GP111354 (9) ,
(plant-specificity: 96%)
GP027495 (6) , GP113268 (5) , GP116166 (3)
3 GP044631 (67) , GP044698 (60) , GP045924 (51) ,
(plant-specificity: 93%)
GP120634 (11) ,
(plant-specificity: 100%)
GP122876 (7) ,
(plant-specificity: 96%)
GP054097 (6) , GP124638 (5) , GP125930 (4) , GP128832 (3) , GP056301 (4) , GP129823 (4)
4 GP074205 (65) , GP074284 (58) , GP075566 (51) ,
(plant-specificity: 91%)
GP135594 (9) ,
(plant-specificity: 100%)
GP137059 (7) ,
(plant-specificity: 96%)
GP085499 (6) , GP139547 (5) , GP141229 (4) , GP141690 (4) , GP088259 (4) , GP145345 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 228
Species Count (w/o splice) Count (w/ splice)
4 4
3 3
10 10
5 6
3 3
8 8
4 4
6 6
4 4
6 6
5 5
3 4
3 5
4 4
4 4
5 11
4 4
3 3
4 4
4 4
3 3
3 3
3 3
5 5
25 38
16 16
5 14
3 3
5 5
3 4
7 7
3 3
4 4
3 3
3 3
6 9
3 3


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Peptidyl-prolyl cis-trans isomerase, PpiC-type
IPR000297
Peptidyl-prolyl cis-trans isomerase, PpiC-type Domain 70 (159) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000297
Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site
IPR023058



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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
228 192 (84%) 174 (76%) [34; 153; 4277] ~241 4430 61


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
228 174 (76%) 1.60208 1.47496 0.734303



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