Family GP016595


Family ID GP016595  add to my list RDF
Family name Gamma Purothionin subfamily   suggest a name
Cross-reference(s) PMID:
A new family of small (5 kDa) protein inhibitors of insect alpha-amylases from seeds or sorghum (Sorghum bicolar (L) Moench) have sequence homologies with wheat gamma-purothionins.
1995329
Curation status ?
Found in Spermatophyta
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Gamma thionin family (plant-specificity: 98%)
GP001279 (354)
2
Gamma Purothionin subfamily
GP016595 (234)
3 GP041230 (229) ,
(plant-specificity: 100%)
GP054864 (5)
4 GP070855 (218) ,
(plant-specificity: 100%)
GP139702 (5) ,
(plant-specificity: 100%)
GP086646 (5) , GP103678 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 234
Species Count (w/o splice) Count (w/ splice)
5 5
5 5
3 3
1 1
12 12
8 9
14 14
17 17
14 18
9 9
4 4
8 8
16 16
3 3
9 9
2 2
3 3
11 12
3 3
3 5
2 2
5 5
3 3
27 27
1 1
14 14
2 2
8 8
7 9
5 5


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Gamma thionin
IPR008176
Gamma thionin Family 97 (228) No
Gamma Purothionin
IPR008177
Gamma Purothionin Family 74 (173) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Knottin, scorpion toxin-like
IPR003614
Knottin, scorpion toxin-like Domain 88 (205) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008176 IPR003614 IPR008177


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Species
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