Family GP016739


Family ID GP016739  add to my list RDF
Family name Unannotated cluster   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
40S ribosomal protein SA family
GP001556 (173)
2 GP016739 (173)
3 GP041371 (173)
4 GP070759 (173)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 173
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
17 17
5 5
1 1
14 14
2 2
5 5
6 6
6 6
3 3
3 4
4 4
4 4
3 3
6 12
4 5
1 1
3 3
2 2
1 1
2 4
2 2
3 3
2 5
4 4
4 10
1 1
6 6
3 5
9 9
3 3
2 3
3 3
2 4
7 8
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein S2
IPR001865
Ribosomal protein S2 Family 77 (134) No
Ribosomal protein S2, eukaryotic/archaeal
IPR005707
Ribosomal protein S2, eukaryotic/archaeal Family 68 (118) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ribosomal protein S2, conserved site
IPR018130
Ribosomal protein S2, conserved site Conserved_site 72 (125) No
Ribosomal protein S2, flavodoxin-like domain
IPR023591
Ribosomal protein S2, flavodoxin-like domain Domain 85 (147) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR018130 IPR005707 IPR001865 IPR023591


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.