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Family GP001406


Family ID GP001406  add to my list RDF
Family name Castor/Pollux ion channel family   suggest a name
Cross-reference(s) PMID:
Antiquity and function of CASTOR and POLLUX, the twin ion channel-encoding genes key to the evolution of root symbioses in plants.
18978069 PMID:
Lotus japonicus CASTOR and POLLUX are ion channels essential for perinuclear calcium spiking in legume root endosymbiosis.
19106374
Comment
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Castor/Pollux ion channel family (plant-specificity: 9%)
GP001406 (201)
2 GP017426 (124) ,
(plant-specificity: 9%)
GP020284 (77)
3 GP042089 (122) ,
(plant-specificity: 9%)
GP045264 (77)
4 GP071513 (122) , GP074882 (77)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 201
Species Count (w/o splice) Count (w/ splice)
7 7
1 1
4 4
5 5
3 3
3 3
3 3
5 5
4 4
3 6
3 3
3 3
3 3
3 7
3 3
3 3
2 2
7 7
4 4
3 3
5 5
9 9
5 18
3 3
8 26
3 3
6 6
3 4
13 13
8 8
7 7
2 2
3 5
7 9
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
CASTOR/POLLUX/SYM8 ion channels
IPR010420
CASTOR/POLLUX/SYM8 ion channels Family 77 (154) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
NAD(P)-binding domain
IPR016040
NAD(P)-binding domain Domain 71 (143) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016040 IPR010420


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
201 157 (78%) 120 (60%) [37; 782; 2434] ~712 4620 498