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Family GP001385


Family ID GP001385  add to my list RDF
Family name S1/p1 nuclease family   suggest a name
Synonym(s) Phospholipase c/p1 nuclease
Cross-reference(s) PMID:
Recognition of single-stranded DNA by nuclease P1: high resolution crystal structures of complexes with substrate analogs.
9726413
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
S1/p1 nuclease family
GP001385 (180)
2 GP016511 (180)
3 GP041125 (180)
4 GP070525 (180)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 180
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
8 8
2 2
4 4
3 3
3 3
3 3
4 5
6 9
6 6
5 5
4 10
5 7
5 5
1 1
3 3
3 3
5 6
2 2
8 8
6 17
3 3
3 4
4 4
4 4
3 4
5 5
5 5
8 13
4 4
5 7
8 9
4 4


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
S1/P1 nuclease
IPR003154
S1/P1 nuclease Family 97 (175) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Phospholipase C/P1 nuclease domain
IPR008947
Phospholipase C/P1 nuclease domain Domain 98 (176) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008947 IPR003154


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
180 146 (81%) 137 (76%) [66; 291; 735] ~278 1592 252


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
180 137 (76%) 0.920667 1.04152 0.339691



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Species



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