Family GP001412


Family ID GP001412  add to my list RDF
Family name Ribonucleoside diphosphate reductase small chain family   suggest a name
Family Ontology
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biological_process
deoxyribonucleoside diphosphate metabolic process
GO:0009186 (88%) - deoxyribonucleoside diphosphate metabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ribonucleoside diphosphate reductase small chain family
GP001412 (159)
2 GP017498 (159)
3 GP042162 (159)
4 GP071590 (159)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 159
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
34 34
3 3
1 1
6 6
2 2
4 4
4 4
2 2
3 3
2 2
2 2
1 1
2 2
3 3
2 2
7 7
1 1
3 3
4 4
2 2
3 3
8 8
3 6
2 2
4 7
2 2
2 2
1 1
10 10
6 6
6 6
3 3
2 2
5 5
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribonucleotide reductase small subunit
IPR000358
Ribonucleotide reductase small subunit Family 88 (140) No
Ribonucleotide reductase small subunit, prokaryotic
IPR026023
Ribonucleotide reductase small subunit, prokaryotic Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ferritin-like superfamily
IPR009078
Ferritin-like superfamily Domain 89 (142) No
Ribonucleotide reductase-related
IPR012348
Ribonucleotide reductase-related Domain 90 (143) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR012348 IPR009078 IPR000358


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
159 153 (96%) 130 (82%) [36; 330; 762] ~296 1105 316