Family GP000217


Family ID GP000217  add to my list RDF
Family name RAG1-activating protein-1-related family   suggest a name
Synonym(s) MTN3-like family; SWEET sugar transporter family
Cross-reference(s) PMID:
Use of a subtractive hybridization approach to identify new Medicago truncatula genes induced during root nodule development.
8634476
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
RAG1-activating protein-1-related family (plant-specificity: 9%)
GP000217 (973)
2
MTN3-like family
GP015411 (971)
3 GP040058 (971)
4 GP069573 (971)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 973
Species Count (w/o splice) Count (w/ splice)
1 1
6 6
2 2
6 7
17 17
74 74
10 10
26 26
24 24
13 13
17 17
23 26
20 22
18 18
24 24
24 42
23 25
24 24
28 28
31 31
18 18
17 18
15 15
30 30
32 66
22 22
28 56
18 18
29 29
18 22
33 33
29 29
36 36
24 24
24 26
52 70
24 24


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
SWEET sugar transporter
IPR004316
SWEET sugar transporter Family 95 (927) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004316


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
973 858 (88%) 796 (82%) [28; 248; 1091] ~240 2879 154




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