Family GP015819
Family ID
GP015819
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Family name
Alpha-amylase family
suggest a name
Synonym(s)
Glycoside hydrolase family 13
Cross-reference(s)
PMID:
The alpha-amylase genes in Oryza sativa: characterization of cDNA clones and mRNA expression during seed germination.
2370848
PMID:
RAmy2A; a novel alpha-amylase-encoding gene in rice.
1541400
PMID:
Characterization of an alpha-amylase multigene cluster in rice.
1714318
PMID:
Regulation of alpha-amylase-encoding gene expression in germinating seeds and cultured cells of rice.
1339378
PMID:
Structural organization and differential expression of rice alpha-amylase genes.
2263460
Curation status ?
Taxonomic coverage
Gene tree
Family level
2
Sequence total: 389
| Species | Sequence Count |
|---|---|
| 4 | |
| 3 | |
| 7 | |
| 5 | |
| 8 | |
| 6 | |
| 3 | |
| 7 | |
| 9 | |
| 14 | |
| 7 | |
| 4 | |
| 12 | |
| 4 | |
| 6 | |
| 12 | |
| 4 | |
| 8 | |
| 4 | |
| 5 | |
| 8 | |
| 10 | |
| 4 | |
| 11 | |
| 7 | |
| 11 | |
| 12 | |
| 12 | |
| 9 | |
| 8 | |
| 11 | |
| 20 | |
| 12 | |
| 5 | |
| 9 | |
| 7 | |
| 5 | |
| 13 | |
| 30 | |
| 5 | |
| 4 | |
| 10 | |
| 7 | |
| 11 | |
| 9 | |
| 7 |
InterPro family
| IPR | Annotation | Type | % | Occurence | Specificity |
|---|---|---|---|---|---|
|
Alpha-amylase, plant
IPR013775
|
Alpha-amylase, plant | Family | 44 | (173) | Yes |
Other InterPro signatures
| IPR | Annotation | Type | % | Occurence | Specificity |
|---|---|---|---|---|---|
|
Glycosyl hydrolase, family 13, catalytic domain
IPR006047
|
Glycosyl hydrolase, family 13, catalytic domain | Domain | 82 | (318) | No |
|
Alpha-amylase, C-terminal beta-sheet
IPR012850
|
Alpha-amylase, C-terminal beta-sheet | Domain | 78 | (302) | No |
|
Glycosyl hydrolase, all-beta
IPR013780
|
Glycosyl hydrolase, all-beta | Homologous_superfamily | 77 | (301) | No |
|
Glycoside hydrolase superfamily
IPR017853
|
Glycoside hydrolase superfamily | Homologous_superfamily | 91 | (354) | No |
Representative InterPro domains - Consensus schema
Domain architecture