Family GP000254


Family ID GP000254  add to my list RDF
Family name Alpha,alpha- trehalose -phosphate synthase family   suggest a name
Cross-reference(s) PMID:
Trehalose mediated growth inhibition of Arabidopsis seedlings is due to trehalose-6-phosphate accumulation.
15181209 PMID:
Trehalose-6-phosphate synthase 1, which catalyses the first step in trehalose synthesis, is essential for Arabidopsis embryo maturation.
11851922 PMID:
Arabidopsis trehalose-6-phosphate synthase 1 is essential for normal vegetative growth and transition to flowering.
15181208 PMID:
The role of trehalose-6-phosphate synthase in Arabidopsis embryo development.
15667326 PMID:
Delayed embryo development in the ARABIDOPSIS TREHALOSE-6-PHOSPHATE SYNTHASE 1 mutant is associated with altered cell wall structure, decreased cell division and starch accumulation.
16553896 PMID:
Immunogold localization of trehalose-6-phosphate synthase in leaf segments of wild-type and transgenic tobacco plants expressing the AtTPS1 gene from Arabidopsis thaliana.
17111094
Family Ontology
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molecular_function
alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0003825 (11%) - alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Alpha,alpha- trehalose -phosphate synthase family (plant-specificity: 9%)
GP000254 (829)
2 GP015338 (596) , GP016172 (223) ,
(plant-specificity: 100%)
GP025436 (7)
3 GP040007 (596) , GP040810 (223) ,
(plant-specificity: 100%)
GP050735 (7)
4 GP069510 (589) , GP070827 (167) , GP074383 (56) ,
(plant-specificity: 100%)
GP081324 (7) , GP137812 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 829
Species Count (w/o splice) Count (w/ splice)
4 4
3 3
24 24
8 11
18 18
23 23
9 9
20 20
20 20
29 29
21 21
18 28
13 16
12 12
16 16
30 44
15 15
13 13
16 16
19 19
15 15
16 20
15 15
42 42
18 59
12 12
21 41
15 15
22 22
11 19
38 38
30 30
33 33
16 16
18 24
29 46
21 21


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Glycosyl transferase, family 20
IPR001830
Glycosyl transferase, family 20 Domain 63 (524) No
Trehalose-phosphatase
IPR003337
Trehalose-phosphatase Domain 62 (511) No
HAD-like domain
IPR023214
HAD-like domain Domain 61 (508) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR023214 IPR003337 IPR001830


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
829 703 (85%) 407 (49%) [47; 762; 5984] ~659 10247 545