Family GP040025


Family ID
GP040025  add to my list
Family name
DREB group III (partial)   suggest a name
Cross-reference(s)
PMID:
The map-based sequence of the rice genome.
16100779 PMID:
The genome sequence and structure of rice chromosome 1.
12447438 PMID:
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
12869764 PMID:
The rice annotation project database (RAP-DB): 2008 update.
18089549 PMID:
The genomes of Oryza sativa: a history of duplications.
15685292 PMID:
OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.
12609047 PMID:
Structural, functional, and phylogenetic characterization of a large CBF gene family in barley.
16244905 PMID:
Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
16407444 PMID:
Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.
10617198 PMID:
Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis.
9707537 PMID:
An Arabidopsis gene family encoding DRE/CRT binding proteins involved in low-temperature -responsive gene expression.
9735350 PMID:
Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.
9881163 PMID:
The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression is regulated by low temperature but not by abscisic acid or dehydration.
9952441 PMID:
Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis.
16244146 PMID:
DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression.
11798174 PMID:
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.
17210932
Comment
join with family ID 40334
Curation status ?
Taxonomic coverage
Magnoliopsida
Gene tree
Family level
3


(click on individual chart bar to display sequence composition below. Several bars can be selected and will remain highlighted)
Sequence total: 2028
Species Sequence Count
14
37
16
46
112
77
71
41
39
29
34
22
25
24
42
49
19
31
32
41
12
39
21
71
85
49
45
43
43
38
59
75
64
61
28
39
37
39
72
30
39
37
20
78
36
67




Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
AP2/ERF domain
IPR001471 		AP2/ERF domain Domain 95 (1922) No
DNA-binding domain superfamily
IPR016177 		DNA-binding domain superfamily Homologous_superfamily 94 (1913) No
AP2/ERF domain superfamily
IPR036955 		AP2/ERF domain superfamily Homologous_superfamily 96 (1939) No

Close Representative InterPro domains - Consensus schema
IPR036955 IPR001471 IPR016177

Close Domain architecture
Clustering




Alignment available at level 1 family ( GP150015 ).





Phylogeny tree available at level 1 family ( GP150015 ).