Family GP000339


Family ID GP000339  add to my list RDF
Family name ATPase, P-type, phospholipid-translocating, flippase Family   suggest a name
Synonym(s) Phospholipid-translocating ATPase
Family Ontology
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biological_process
phospholipid transport
GO:0015914 (70%) - phospholipid transport
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
ATPase, P-type, phospholipid-translocating, flippase Family
GP000339 (746)
2
Phospholipid-translocating ATPase family
GP015264 (743) , GP117314 (3)
3 GP039944 (737) ,
(plant-specificity: 100%)
GP057208 (6) , GP130464 (3)
4 GP069455 (737) ,
(plant-specificity: 100%)
GP089709 (6) , GP147521 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 746
Species Count (w/o splice) Count (w/ splice)
2 2
9 9
8 8
13 14
8 8
27 27
9 9
25 25
22 22
29 29
18 18
13 20
12 20
12 12
12 12
17 24
14 14
10 10
12 12
17 17
11 11
13 15
17 17
38 38
20 47
10 10
20 39
11 11
15 15
12 19
35 35
36 36
27 28
14 14
18 23
34 55
21 21


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Cation-transporting P-type ATPase
IPR001757
Cation-transporting P-type ATPase Family 76 (565) No
Phospholipid-transporting P-type ATPase, subfamily IV
IPR006539
Phospholipid-transporting P-type ATPase, subfamily IV Family 70 (520) Yes
Protein of unknown function DUF2837
IPR021260
Protein of unknown function DUF2837 Family 1 (2) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
P-type ATPase, A domain
IPR008250
P-type ATPase, A domain Domain 67 (502) No
P-type ATPase, phosphorylation site
IPR018303
P-type ATPase, phosphorylation site PTM 70 (521) No
HAD-like domain
IPR023214
HAD-like domain Domain 79 (592) No
P-type ATPase, cytoplasmic domain N
IPR023299
P-type ATPase, cytoplasmic domain N Domain 77 (574) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001757 IPR023299 IPR023214 IPR008250 IPR018303 IPR006539


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
746 636 (85%) 428 (57%) [44; 1085; 3237] ~877 7066 737