Family GP003750


Family ID GP003750  add to my list RDF
Family name Phosphoribosylaminoimidazole-succinocarboxamide synthase family   suggest a name
Synonym(s) SAICAR synthetase
Cross-reference(s) PMID:
De novo purine synthesis in Arabidopsis thaliana. II. The PUR7 gene encoding 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase is expressed in rapidly dividing tissues.
8938402
Family Ontology
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molecular_function
phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GO:0004639 (76%) - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Phosphoribosylaminoimidazole-succinocarboxamide synthase family
GP003750 (74)
2 GP020601 (74)
3 GP045607 (74)
4 GP075256 (74)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 74
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
9 9
1 1
1 1
5 5
1 1
1 1
1 1
2 2
2 2
1 2
2 2
1 1
1 1
2 2
1 1
3 3
1 1
1 1
1 1
1 2
1 1
2 2
1 7
1 1
1 3
1 1
2 2
1 1
3 3
4 4
1 1
1 1
1 1
2 3
1 1


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
SAICAR synthetase
IPR001636
SAICAR synthetase Family 85 (63) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
ATP-grasp fold, subdomain 2
IPR013816
ATP-grasp fold, subdomain 2 Domain 81 (60) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013816
SAICAR synthetase, conserved site
IPR018236 IPR001636



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
74 63 (85%) 49 (66%) [60; 389; 597] ~331 864 341