Family GP003606


Family ID GP003606  add to my list RDF
Family name Ribosomal protein rsm22 family   suggest a name
Cross-reference(s) PMID:
Atomic structures at last: the ribosome in 2000.
11297922
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ribosomal protein rsm22 family
GP003606 (73)
2 GP020307 (71)
3 GP045287 (68) , GP128339 (3)
4 GP074910 (68) , GP144584 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 73
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
3 3
1 1
3 3
3 3
1 1
1 1
1 1
2 2
1 1
1 1
1 1
1 1
1 1
1 2
1 1
1 1
1 1
1 1
1 1
1 1
3 3
4 4
1 5
1 1
1 3
1 1
1 1
1 3
3 3
5 5
3 3
1 1
1 2
2 5
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein Rsm22, bacterial-type
IPR015324
Ribosomal protein Rsm22, bacterial-type Family 88 (64) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR015324


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
73 60 (82%) 45 (62%) [33; 504; 982] ~425 1618 444