Family GP003942


Family ID GP003942  add to my list RDF
Family name S-adenosyl-l-methionine dependent methyltransferase, mraw type family   suggest a name
Synonym(s) Bacterial methyltransferase
Cross-reference(s) PMID:
mraW, an essential gene at the dcw cluster of Escherichia coli codes for a cytoplasmic protein with methyltransferase activity.
10572301 PMID:
Cell wall peptidoglycan mutants of Escherichia coli K-12: existence of two clusters of genes, mra and mrb, for cell wall peptidoglycan biosynthesis.
4563986
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
S-adenosyl-l-methionine dependent methyltransferase, mraw type family
GP003942 (70)
2 GP020895 (63) ,
(plant-specificity: 19%)
GP114737 (5)
3 GP045932 (63) ,
(plant-specificity: 19%)
GP126794 (5)
4 GP075575 (63) , GP145058 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 70
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
8 8
2 2
1 1
2 2
1 1
1 1
1 1
2 2
2 2
1 2
1 2
1 1
1 1
1 1
1 1
3 3
1 1
2 2
1 1
1 1
2 2
1 1
1 7
1 1
1 1
1 1
1 1
1 1
5 5
2 2
2 2
1 1
1 1
3 3
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal RNA small subunit methyltransferase H
IPR002903
Ribosomal RNA small subunit methyltransferase H Family 80 (56) No
MraZ
IPR003444
MraZ Family 1 (1) Yes
Ubiquinone biosynthesis protein Coq7
IPR011566
Ubiquinone biosynthesis protein Coq7 Family 3 (2) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain
IPR023397
S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain Domain 77 (54) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002903 IPR023397


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
70 62 (89%) 52 (74%) [109; 374; 1147] ~362 1415 270