Family GP003397


Family ID GP003397  add to my list RDF
Family name Dihydrodipicolinate reductase family   suggest a name
Cross-reference(s) PMID:
Characterization of dihydrodipicolinate reductase from Thermotoga maritima reveals evolution of substrate binding kinetics.
18250105
Comment present domain: ipr011770 dihydrodipicolinate reductase, bacterial and plant
Family Ontology
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molecular_function
4-hydroxy-tetrahydrodipicolinate reductase
GO:0008839 (47%) - 4-hydroxy-tetrahydrodipicolinate reductase
NADPH binding
GO:0070402 (47%) - NADPH binding
biological_process
lysine biosynthetic process via diaminopimelate
GO:0009089 (47%) - lysine biosynthetic process via diaminopimelate
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Dihydrodipicolinate reductase family
GP003397 (70)
2 GP019889 (70)
3 GP044814 (70)
4 GP074420 (70)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 70
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
1 1
1 1
1 1
1 1
2 4
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
1 1
2 2
7 7
1 4
1 1
2 7
1 1
1 1
1 4
5 5
2 2
2 3
1 1
1 1
4 8
1 1


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Dihydrodipicolinate reductase, bacterial/plant
IPR011770
Dihydrodipicolinate reductase, bacterial/plant Family 63 (44) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Dihydrodipicolinate reductase, N-terminal
IPR000846
Dihydrodipicolinate reductase, N-terminal Domain 83 (58) No
NAD(P)-binding domain
IPR016040
NAD(P)-binding domain Domain 84 (59) No
Dihydrodipicolinate reductase, C-terminal
IPR022663
Dihydrodipicolinate reductase, C-terminal Domain 67 (47) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016040 IPR022663 IPR000846 IPR011770


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
70 52 (74%) 46 (66%) [65; 299; 499] ~269 997 283




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