Family GP002965


Family ID GP002965  add to my list RDF
Family name Atpase, v0 complex, subunit e family   suggest a name
Cross-reference(s) PMID:
The evolution of A-, F-, and V-type ATP synthases and ATPases: reversals in function and changes in the H+/ATP coupling ratio.
15473999 PMID:
Mechanisms of ATPases--a multi-disciplinary approach.
15078220
Comment warning probably member of a superfamily (atpase) according interpro
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Atpase, v0 complex, subunit e family (plant-specificity: 50%)
GP002965 (70)
2
(plant-specificity: 40%)
GP019399 (70)
3 GP044267 (70)
4 GP073819 (70)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 70
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
1 1
2 2
2 2
4 4
1 1
1 1
1 1
1 1
1 1
2 3
1 1
1 1
2 2
3 3
3 3
2 4
1 1
1 1
3 5
1 1
2 7
3 3
2 3
4 4
1 1
1 1
1 2
4 6
2 2


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
ATPase, V0 complex, subunit e1/e2
IPR008389
ATPase, V0 complex, subunit e1/e2 Family 90 (63) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008389


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
70 56 (80%) 56 (80%) [28; 71; 269] ~74 406 68


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
70 56 (80%) 0.585993 0.377469 0.344752



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