Family GP003824


Family ID GP003824  add to my list RDF
Family name VPS53 family   suggest a name
Cross-reference(s) PMID:
Vps52p, Vps53p, and Vps54p form a novel multisubunit complex required for protein sorting at the yeast late Golgi.
10637310 PMID:
A new translocation in chronic myelogenous leukemia.
1063730
Family Ontology
Close Hide
molecular_function
protein binding
GO:0005515 (1%) - protein binding
biological_process
vesicle docking involved in exocytosis
GO:0006904 (1%) - vesicle docking involved in exocytosis
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
VPS53 family
GP003824 (69)
2 GP020707 (69)
3 GP045720 (69)
4 GP075369 (69)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 69
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
4 4
2 2
1 1
3 3
1 1
2 2
2 2
1 1
2 2
1 1
1 1
1 1
1 1
2 4
1 1
1 1
2 2
1 1
1 1
2 3
1 1
6 6
1 6
1 1
1 5
1 1
1 1
1 1
2 2
2 2
1 1
1 1
1 1
2 2
1 1


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Vps53-like, N-terminal
IPR007234



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
69 57 (83%) 39 (57%) [118; 802; 1078] ~646 1664 797