Family GP003488


Family ID GP003488  add to my list RDF
Family name Brain and reproductive organ-expressed (BRE)homologs family   suggest a name
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Brain and reproductive organ-expressed (BRE)homologs family (plant-specificity: 19%)
GP003488 (67)
2
(plant-specificity: 19%)
GP020074 (67)
3 GP045032 (67)
4 GP074871 (67)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 67
Species Count (w/o splice) Count (w/ splice)
1 1
1 2
1 1
1 1
1 1
2 2
1 1
2 2
2 2
1 1
1 2
1 1
1 1
3 6
1 3
2 2
1 1
1 1
1 1
1 1
1 1
1 1
1 5
1 1
2 6
1 1
1 1
1 1
3 3
1 1
1 1
2 2
1 1
2 7
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Brain/reproductive organ-expressed protein
IPR010358
Brain/reproductive organ-expressed protein Family 85 (57) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR010358


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
67 47 (70%) 39 (58%) [106; 374; 663] ~333 1344 350