Family GP039825


Family ID GP039825  add to my list RDF
Family name Unannotated cluster   suggest a name
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Ubiquitin-conjugating superfamily (plant-specificity: 9%)
GP000049 (3080)
2
Ubiquitin-conjugating family 1
GP015102 (2267)
3 GP039825 (1908)
4
Ubiquitin-conjugating enzyme E2 D/E , H, A, I, C, N subfamily
GP069413 (1686) ,
Ubiquitin-conjugating enzyme E2 W subfamily
GP071597 (104) , GP072564 (77) ,
(plant-specificity: 19%)
GP132701 (34) , GP141461 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1908
Species Count (w/o splice) Count (w/ splice)
14 14
15 15
107 107
26 32
22 22
51 51
23 23
64 64
41 41
59 59
40 40
29 52
33 43
27 27
35 35
53 128
31 38
27 27
37 37
38 38
28 28
30 55
23 23
86 86
58 190
29 29
43 147
24 24
63 63
20 37
73 73
29 29
23 29
25 25
24 37
55 113
27 27


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ubiquitin-conjugating enzyme, E2
IPR000608
Ubiquitin-conjugating enzyme, E2 Domain 92 (1756) No
Ubiquitin-conjugating enzyme/RWD-like
IPR016135
Ubiquitin-conjugating enzyme/RWD-like Domain 94 (1784) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000608 IPR016135
Ubiquitin-conjugating enzyme, active site
IPR023313



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)