Family GP000338


Family ID GP000338  add to my list RDF
Family name Terpene synthase family   suggest a name
Cross-reference(s) PMID:
A new triterpene synthase from Arabidopsis thaliana produces a tricyclic triterpene with two hydroxyl groups.
16774269 PMID:
Genome mining to identify new plant triterpenoids.
15125655 PMID:
Origin of structural diversity in natural triterpenes: direct synthesis of seco-triterpene skeletons by oxidosqualene cyclase.
17263431
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Terpene synthase family (plant-specificity: 9%)
GP000338 (621)
2 GP015262 (621)
3 GP039943 (621)
4 GP069454 (621)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 621
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
17 17
3 3
4 4
10 10
1 1
2 2
1 1
11 11
9 9
13 19
8 8
7 7
20 20
15 19
31 32
28 28
9 9
10 10
59 59
15 17
16 16
26 26
19 51
14 14
20 35
13 13
9 9
11 14
45 45
14 14
38 40
6 6
15 18
14 24
7 7


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Squalene cyclase
IPR018333
Squalene cyclase Family 50 (310) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Prenyltransferase/squalene oxidase
IPR001330
Prenyltransferase/squalene oxidase Repeat 55 (344) No
Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR008930
Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Domain 90 (556) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008930 IPR001330
Terpene synthase, conserved site
IPR002365 IPR018333



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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
621 542 (87%) 295 (48%) [27; 596; 8241] ~507 11658 650