Family GP004197


Family ID GP004197  add to my list RDF
Family name Eya domain containing family   suggest a name
Cross-reference(s) PMID:
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
18079367
Comment interpro says it belongs to the phosphatase subgroup of the haloacid dehalogenase (had) superfamily
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Eya domain containing family (plant-specificity: 9%)
GP004197 (60)
2
EYA domain containing family (plant-specificity: 9%)
GP021333 (60)
3
(plant-specificity: 9%)
GP046820 (58)
4
(plant-specificity: 9%)
GP076597 (58)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 60
Species Count (w/o splice) Count (w/ splice)
1 1
4 6
2 2
1 1
3 3
3 3
1 1
1 1
1 1
1 1
1 1
1 1
3 3
1 1
1 1
1 1
1 1
1 1
1 1
1 1
4 4
1 4
1 1
2 8
1 1
1 1
2 2
1 1
1 1
1 1
1 1
2 2
1 1


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
EYA
IPR006545



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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
60 49 (82%) 43 (72%) [69; 305; 771] ~295 978 260




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