Family GP000902


Family ID GP000902  add to my list RDF
Family name Ribosomal l14b/l23e family   suggest a name
Cross-reference(s) PMID:
Atomic structures at last: the ribosome in 2000.
11297922
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ribosomal l14b/l23e family (plant-specificity: 30%)
GP000902 (526)
2
Large subunit ribosomal protein L23e subfamily
GP016277 (300) ,
Large subunit ribosomal protein L14 subfamily
GP017250 (104) , GP018352 (83) , GP023839 (20) ,
(plant-specificity: 87%)
GP111646 (8) , GP111730 (8) , GP117612 (3)
3 GP041259 (299) ,
(plant-specificity: 98%)
GP047407 (284) , GP043477 (104) , GP043064 (83) , GP049375 (20) ,
(plant-specificity: 87%)
GP122236 (8) , GP122346 (8)
4 GP070655 (280) , GP072990 (104) , GP072561 (80) ,
(plant-specificity: 100%)
GP076613 (28) ,
(plant-specificity: 33%)
GP133541 (17) , GP079637 (15) ,
(plant-specificity: 87%)
GP136187 (8) , GP136361 (8) , GP139500 (5) , GP145909 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 526
Species Count (w/o splice) Count (w/ splice)
5 5
8 8
35 35
13 14
6 6
14 14
3 3
10 10
9 9
113 113
7 7
12 14
8 8
7 7
7 7
14 26
8 8
5 5
18 18
8 8
5 5
7 9
4 4
12 12
11 21
5 5
15 28
5 5
10 10
8 14
22 22
8 8
16 17
7 7
4 4
15 19
11 11


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein L14b/L23e
IPR000218
Ribosomal protein L14b/L23e Family 68 (357) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ribosomal protein L14 domain
IPR023571
Ribosomal protein L14 domain Domain 72 (377) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR023571 IPR000218


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
526 474 (90%) 403 (77%) [35; 141; 1113] ~214 2649 66




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