Family GP048556


Family ID GP048556  add to my list RDF
Family name Unannotated cluster   suggest a name
Curation status ?
Found in Spermatophyta plant-specific
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Late embryogenesis abundant 3 family (plant-specificity: 100%)
GP002224 (175)
2
(plant-specificity: 100%)
GP023180 (47)
3
(plant-specificity: 100%)
GP048556 (47)
4
(plant-specificity: 100%)
GP080791 (28) ,
(plant-specificity: 100%)
GP136676 (7) ,
(plant-specificity: 100%)
GP137929 (6) , GP141033 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 47
Species Count (w/o splice) Count (w/ splice)
10 10
1 1
1 1
2 2
1 1
1 1
3 3
2 2
4 4
2 3
3 3
1 1
1 1
2 2
1 2
1 1
1 1
1 1
1 1
1 1
1 1
1 2
1 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Late embryogenesis abundant protein, LEA-5
IPR004926
Late embryogenesis abundant protein, LEA-5 Family 91 (43) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004926


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)