Family GP000351


Family ID GP000351  add to my list RDF
Family name Oxysterol-binding protein family   suggest a name
Synonym(s) OSBP
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Oxysterol-binding protein family
GP000351 (548)
2 GP015585 (458) , GP018275 (90)
3 GP040264 (351) , GP042515 (107) , GP042980 (87) , GP129010 (3)
4 GP069846 (351) , GP071967 (107) , GP072478 (87) , GP145628 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 548
Species Count (w/o splice) Count (w/ splice)
3 3
5 5
10 10
11 11
5 5
14 14
8 8
16 16
13 13
15 15
14 14
6 8
7 9
9 9
7 7
12 38
7 7
6 6
7 7
8 8
8 8
15 24
9 9
21 21
13 55
7 7
11 37
5 5
11 11
7 15
14 14
13 13
20 22
9 9
13 13
29 56
16 16


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Oxysterol-binding protein
IPR000648
Oxysterol-binding protein Family 88 (483) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000648


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
548 403 (74%) 333 (61%) [53; 506; 1481] ~535 3803 200